Lytechinus variegatus (green sea urchin): 121415849
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Entry
121415849 CDS
T11173
Name
(RefSeq) heterogeneous nuclear ribonucleoproteins A2/B1-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121415849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121415849
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121415849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
121415849
NCBI-ProteinID:
XP_041465146
LinkDB
All DBs
Position
5:complement(26935470..26959561)
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AA seq
467 aa
AA seq
DB search
MNIVLNPPTNIGKRMGEEVGKIFVGGVNRETTIDAFRAYFESFGKINDIVLMMDKDNNNG
MNKGYGFVKYDDPRCADDVILKKGQHKLDGKELDTKPCNARGSRPRGGIPDDNRTKKIFV
GGISQQAGKQDLYDVFKPFGMVEDVHIMTDNATGKHRGFGFVTLDSEEAVEKLVQIRHLE
LKGKSMEIKKAQPKMNRGFGGPGGPGGPMGGGGFPQGGGSWNQGGQPGFGGFGGGSQWNM
GQPMGQFGQQQQQGGFQQRGGPGQGYSGQQQGYNNGYRQQGQGGPQYGQQGGGYAGQQQQ
QQPQQQHNYGGKPSAGGDNYGTKNLRHGGQGYSNYGGGGYGQSQQDPYGQQQQQQQQYGN
QGSMGNYPQEASGYGPQRVNYNQQQQGYNQGQFGNDMPGQNFGPPQQQQQQQPPPPQPPQ
QQQPPQGYGQPVEGGPDMYGNNNYGRGNLGGGNQFHPYRRFQGNQVQ
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgtccttaatcctccaactaacattgggaagagaatgggcgaagaagtggga
aaaatatttgttggtggcgtgaaccgggaaactactatagatgcattccgggcatatttt
gagtcatttggaaagatcaacgatatcgttttgatgatggataaggacaacaacaatggc
atgaataagggctatggctttgtgaaatatgatgatccacgctgtgcagatgatgtcatt
ttaaagaaaggccagcataaacttgatggcaaagagctggacacaaaaccttgcaatgcc
cgaggatctagaccaagaggtggcatacctgacgataacagaaccaagaagatctttgtt
gggggtatctcacagcaggcaggcaagcaggatctttatgatgtcttcaaaccctttgga
atggtagaagatgtgcacattatgacagacaatgccacaggaaagcacagaggcttcggc
tttgtgacgttggatagtgaagaagccgtagagaaattggtccaaatacgccatctggag
ctgaagggaaaatcgatggagattaaaaaggcccagccgaagatgaacagagggttcgga
gggccaggtggaccaggaggacctatgggtggaggaggcttcccacaaggaggcggtagc
tggaaccaagggggacagccaggctttggtggattcggagggggcagccagtggaacatg
ggtcaacccatgggccaatttgggcagcagcagcaacaaggaggatttcagcagagaggt
ggcccaggccaggggtacagcggccagcaacaagggtacaacaacggctaccggcaacaa
ggtcaggggggaccacaatacggtcaacaaggaggaggttatgcggggcagcagcagcaa
caacagccacagcagcaacataactatggtgggaagcccagtgcaggaggtgataattat
ggaaccaaaaatcttcgccatggtggacagggctatagtaattatggaggaggtggatat
ggacaatctcaacaggacccgtatggacaacaacaacagcagcaacagcaatatggaaac
caaggttcaatgggtaactatccccaagaagcatcagggtatggtcctcagcgagtgaac
tacaaccaacaacaacaaggctacaatcaaggacaattcggtaacgacatgccaggacag
aactttggtccacctcagcaacagcagcagcagcaaccaccaccaccacagccaccacag
caacagcaaccaccacaagggtacgggcaaccggttgaagggggccccgacatgtacggc
aacaacaactacggaagaggcaacttgggaggagggaaccagttccatccgtacagacga
ttccaaggcaatcaggttcagtaa
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