Lytechinus variegatus (green sea urchin): 121415889
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Entry
121415889 CDS
T11173
Name
(RefSeq) protein SMG5-like
KO
K11125
protein SMG5
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121415889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121415889
03032 DNA replication proteins [BR:
lvg03032
]
121415889
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
121415889
mRNA cycle factors
Common to processing body (P body) and stress granule
121415889
DNA replication proteins [BR:
lvg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
121415889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
121415889
NCBI-ProteinID:
XP_041465201
LinkDB
All DBs
Position
5:29267633..29296573
Genome browser
AA seq
988 aa
AA seq
DB search
MRMRLRDLCERLMMLHPIDFGRKAEEILWWKVYYNVITLAKKSKKYIRSGSSLECAYRTH
LLAATGFYHHLLMRLQWEYGLQENHIMDFISFPDQDQVKDTCMDANKPEAKDWAQKACHR
CLIYLGDLARYRQEFEGPSSCLLAQRFYHQALVLNPAMGMPHNQLGTLAGTRYQGLDAAY
HYLRCWLSDLRFDGAIANLEKVFERNQKRFNELPSSPSPDLPAELQRPRDIKQFLIRFLY
LQELFQPSNKTSTDTLPSLCQEVLQGFHQCMLHGAVPHARQRDEEGRESYLSNDIIFKLV
VLTLMSTYRLQKAGSKQTSTAVVFTLALFSYILNHLCEKLNNAVYRKIYPDQTATAFTKA
QDSGGSTDGRASPANTITPILSQDVDSDGTVKPAKKKQQKKKPKTVLKAMRRRRKRAGMG
AHTSEESDLSEGEPGEDNQSNGSSGESGEERVLAAESDSDYFMDSQELELDDEEALEKHN
VHEDFQTPPPGEGEEVALNIMNDIMVEDMSSQLITPPAGPTHTPPGRRNIRLAPSFDAYT
KETSSSKTKEDGQDKKGGSPMGSLQTSPGKENKDTSVTSASTSPTELQTSQIPLPLIMEI
LTSEGLLPVIKILTDWLRTNEDFIIKTAQSSQPLWARLASLLNMCPHEKSLVNQDWCGSI
ALRQLLEGALNSGNGKTWYQPIPLTEDIAIWTMPPLQYLQKKMKFGIHHDLDLTAQEETV
IRVLCLRQFGYYLSSIEGISLCCEDDHFISEAVDQSDEQEDDEPQQQPQDDESQGSDKPE
EKVDDGETRRMQVMRGMAQLRLQSEVSQLEGSIEPLGMDTLSPYLIPDTAVLSNQLSVVR
SLVATSRFIFIIPKAVVSQLDVNKKYQSKAREAIKFMEKEFQIGNRYLRAQKDKESLRFD
DNSKAKIDDVNVRTFCSIAECAHFFAVRSGDPSLRSPANPTPGGMVTILTHQEPSDNPRV
TATIDKLLNVGVDVTTARDFQARWQAHT
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatgagattgcgtgatctttgtgaacgtttgatgatgcttcacccgattgatttt
gggagaaaagcagaagagattctctggtggaaagtctattataatgtcattaccctggct
aagaagagtaaaaagtacatacgcagcggttcttccctggagtgcgcgtaccggacacac
ctcttggccgctacaggattctaccatcatctcctgatgaggctacagtgggagtatggc
ctgcaggagaaccacatcatggacttcatcagcttcccggatcaagaccaggtcaaagat
acctgcatggatgccaataaaccagaggccaaagactgggctcagaaagcctgtcaccga
tgtctcatctatcttggtgacttggcaaggtataggcaggaatttgaaggtcctagtagt
tgtcttcttgctcagcgattctaccaccaagccctggtcctgaaccctgccatgggcatg
cctcataatcagctgggtaccctggccggaacgcgctatcaaggactcgatgcagcctat
cattacttgcgttgctggttatcagatctgaggtttgacggtgctattgcgaacttggaa
aaggtgtttgaaagaaatcagaagagatttaatgagttgccttcgagtccaagccctgat
cttccagcagaattacagagaccacgggacatcaaacagtttctgattcgtttcctctac
ctgcaagagctgtttcagccaagcaacaagacgtccactgacaccctgccgtcgctatgt
caggaggtgctgcagggcttccaccagtgcatgctgcatggcgccgtacctcatgcaagg
caaagggacgaggagggcagagagagctatctgtccaatgatattatcttcaaactggtt
gtgcttactctgatgagtacatataggcttcagaaagcaggttccaagcaaacctccaca
gctgttgtcttcaccctcgccttattctcgtacatactcaaccatctttgtgagaaactc
aacaatgctgtctacagaaagatttatcccgaccagactgctactgctttcacaaaagcc
caagactcgggtggatcaaccgacggccgagccagtccggccaacaccatcacacctatc
ctgagccaggacgtagacagcgacggcactgtcaaaccggccaagaagaagcagcagaag
aagaagcccaagacggtgctgaaggccatgcgacgccgtcggaagagggccgggatgggg
gcccacaccagcgaggaatctgacctcagcgagggggaacccggagaggacaatcaatcc
aacggtagctctggagagtctggggaggagagggttctggctgctgaatcagatagtgat
tatttcatggacagccaggagcttgagctagatgatgaagaggctttggagaaacataat
gttcatgaggatttccagacccctcccccaggtgaaggtgaggaggtcgccctcaacatc
atgaacgacatcatggtggaagacatgtcctctcaactcatcacccctcccgccggcccc
acccatacccctcccggtaggcgtaacatccgcctggcaccaagcttcgacgcttacacc
aaggaaacatcgtcttcaaagaccaaggaagatggccaggataagaaagggggatccccc
atggggtccttacagacttctccaggaaaagaaaacaaagataccagtgtcactagtgct
tcaaccagcccaacggaactacagaccagtcagatccctctaccgctgatcatggagata
ttgacaagcgagggcctcctacctgtcattaagatcctcactgattggctgcggactaat
gaagacttcatcataaagacagcacagagttctcagccactctgggctagactagccagt
ctcctcaacatgtgtccccatgaaaagtcacttgtaaaccaagattggtgtggtagcatt
gccctgagacagctccttgagggtgctctcaacagtggaaatggcaagacatggtaccag
cctattcctctgactgaagacatcgctatatggaccatgccgcctctacagtacctacag
aagaagatgaagttcggaatccatcatgacctggacctgactgcacaagaagagactgtg
atacgagtcctgtgtcttcgtcagtttggttactacctgagcagtatcgagggtatcagt
ctttgttgcgaggatgatcacttcatcagtgaagctgtagaccagtctgatgaacaagaa
gatgacgaaccccagcaacaaccacaggatgatgaatctcaaggaagtgataaacctgaa
gaaaaagttgatgatggagaaacaaggagaatgcaagttatgagaggaatggcccagctt
agattacagtctgaagtaagtcagctcgaaggcagtatagaacccctgggcatggacact
ctttcaccttacctgatcccagatactgctgtcttatccaatcagctatcagttgtgaga
tcgttagtcgctacatctcgattcatcttcattatacctaaagcagttgtttctcaattg
gatgtcaacaagaaataccaatccaaggctcgagaagcgattaagttcatggagaaagaa
ttccaaattggcaacagatacttaagagcacaaaaagataaagagagtctacgctttgat
gacaactccaaagcaaagatagatgatgttaatgtcagaaccttctgcagcatagcggaa
tgtgctcacttctttgccgttcgctccggggatccctccttgcgtagccctgccaaccct
accccaggggggatggtcaccattctcacacaccaggagccatcggacaatcccagggtg
acggccaccatcgacaagcttctcaacgtcggtgtcgacgtcaccacggccagggatttc
caagctagatggcaggcccatacgtga
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