Lytechinus variegatus (green sea urchin): 121415976
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Entry
121415976 CDS
T11173
Name
(RefSeq) U3 small nucleolar RNA-associated protein 15 homolog isoform X1
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121415976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lvg03009
]
121415976
Ribosome biogenesis [BR:
lvg03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121415976
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP15_C
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_IFT122_1st
WD40
WDR55
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_NOL10_N
Beta-prop_TEP1_2nd
Beta-prop_ACSF4
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
PAC11
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
DSE1_N
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_NWD2_C
NBCH_WD40
KNTC1_N
Beta-prop_EML
Beta-prop_At4g14310
WD40_like
Beta-prop_VPS8
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_WDR75_2nd
GadX_N
SHKBP1_KCTD3_C
Motif
Other DBs
NCBI-GeneID:
121415976
NCBI-ProteinID:
XP_041465322
LinkDB
All DBs
Position
5:complement(33969671..33985977)
Genome browser
AA seq
532 aa
AA seq
DB search
MSYNYKPTAVKRLPRAKGQPSKEALFWKNFEFPVTVKEYGAVTDIDFSPVEPYNFAVSSS
TRVQIYNPLTNQIERSLSRFKGVAYGASYRQDGKLMVAGGDESFVRLFDLSGRAVLRIFK
GHQGPVHVAKFAANNQVMSCSDDNTVRCWDIPSEEEVIRFSDHTDYIRSGVVSPSSKDIW
LTGSYDHSVKMYDLRTGSSIMSVDHGQPVERVMMFPAGGVFLSAGGNYVKVWDALAGGRL
LATVSNHHKTITAMCFNGNNSRLLTASLDRHVKVYDVTTYQLVASMDYPAPILSLGISSD
DKTLVVGATSGLLSIKHRKPDDELQTSKPHRQRSAGANSRYYVHGKVFTPKEDDMVVTHI
NKDHLEKYDRMLKKFEHSKALDAALHPNVRLRTPHVTFSLLQELIRRGVVKSALSGRDDR
WLCIILTFLKKYISDTNFTPIAVDISNILLDIYGPVMGESEDVMKRFQALQVGLQQELRY
HTTLEEIRGMLDTILAASHSTSSITKETNNLDEPRVNSDKRMNANGLEMGAT
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaattacaaaccgactgctgtgaaaagacttccacgtgccaagggacaacca
agcaaagaggcgctgttttggaagaattttgaatttccagtaactgtcaaggaatatggt
gctgtaaccgacattgacttttctcctgttgagccttataactttgctgtctcgagctct
acaagagttcaaatctacaatccattaacaaaccagattgagaggtccttgtctcgtttc
aagggcgttgcgtatggagctagctatcgccaagatggtaaactcatggtggcaggaggg
gatgaatcgtttgtgcgtctctttgatctctcaggccgtgccgtcctcagaatcttcaaa
gggcatcaagggcctgtccatgttgccaagtttgcagcgaacaatcaggtgatgtcgtgt
tcagatgacaacacagtccgttgttgggatataccaagtgaagaagaagtcatccgtttc
tcagatcacactgattatatcaggtcaggagtcgttagccctagtagcaaagacatctgg
cttactggatcatatgaccattctgtgaagatgtatgatttgaggacaggttctagtatt
atgagtgtagatcatggtcagccagtggagagggttatgatgttccctgccggaggagtc
tttttatctgcaggtggaaactacgtgaaagtatgggatgcccttgctgggggtcgtctc
ctagcaacagtaagcaatcatcacaagacaattacagctatgtgttttaatggaaacaat
tcaagactgcttactgcatctttggacagacatgtgaaggtctacgatgtcaccacatat
cagctggttgccagtatggactaccccgcacccattctatcacttggtatttcttctgac
gacaagacacttgttgtcggtgctacatcaggactgctatccatcaaacatcgcaaacca
gatgatgagctgcagacttccaagcctcataggcaacggagtgcaggggctaatagtaga
tactatgttcatggcaaggtgttcacacctaaagaggatgatatggtagtcactcacatc
aacaaagatcatcttgagaagtatgatagaatgttgaagaagtttgaacattccaaagcc
ttagatgcagcccttcatccaaatgttagattacgaacaccccatgtgaccttcagcttg
ctccaagaattgatcagacgtggtgttgtgaagagcgccctctctggtagggatgatcgt
tggctgtgtatcatattgaccttcttgaagaaatacatatcagacacaaacttcactcct
attgctgttgatatttcaaatattctcttagatatctatggtccagtgatgggcgagagt
gaggatgttatgaagcggttccaggccttgcaggtagggcttcagcaggagctgcgttac
cacacgacgttagaggaaatccgagggatgctggataccatcctggctgcgtcccattct
acatcctccatcaccaaggaaaccaacaacttagatgagccaagggtgaacagtgataag
aggatgaacgccaatggacttgagatgggggccacatga
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