Lytechinus variegatus (green sea urchin): 121416285
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Entry
121416285 CDS
T11173
Name
(RefSeq) threonine--tRNA ligase 1, cytoplasmic-like isoform X1
KO
K01868
threonyl-tRNA synthetase [EC:
6.1.1.3
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
121416285
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
lvg01007
]
121416285
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lvg03016
]
121416285
Enzymes [BR:
lvg01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.3 threonine---tRNA ligase
121416285
Amino acid related enzymes [BR:
lvg01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
121416285
Transfer RNA biogenesis [BR:
lvg03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
121416285
Prokaryotic type
121416285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
HGTP_anticodon
TGS
tRNA_SAD
bHLH_INO2
Motif
Other DBs
NCBI-GeneID:
121416285
NCBI-ProteinID:
XP_041465752
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Position
5:complement(46008419..46034238)
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AA seq
731 aa
AA seq
DB search
MISSLLFRHCKRVLLLTRQRRMSVEAMASSGKGEGKQGKKKKDKKGGGGGGGGAQQHELN
PWPEYIQNRIDLFDRLKAEADAQFAAKVPAPIKVTLPDGKVVDGQSWRTTPYEIAQSISQ
GLADNAVIAKVNGVLWDLDRPFEEDSKLELHKFDSEEGQQVFWHSSAHMLGEAMERKYGG
CLCYGPPIENGFYYDSFLDGQQVSSNDFDSINQIVKSIQKDKQPFVRLEMTKEDLLKMFE
YNEFKRRIISERVQTRTTTVYRCGPLIDLCRGPHVRHTGKVKAFDVVKTSSTYWEGKADK
ESLQRIYGISFPDNKQLKEWKHFQAEAAKRDHRKIGREQELFFFHELSPGSCFFQPKGAF
IYNTLIDFIRSEYKKRGFQEVVSPNIYNSKLWITSGHWQHYDDNMFQFDVEKERYALKPM
NCPGHCLIFDTRPRSWRELPLRMADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCPQDQ
IEQEIAGCLDFLSSVYSVFGFTYKLALSTRPEKYLGEIEVWDSAEKQLENSLNKFGAEWR
INPADGAFYGPKIDITIQDALRRSHQCATIQLDFQLPIRFNLKYSAADGTEKRPVIIHRA
ILGSVERMIAILTENYGGKWPFWLSPRQCIVIPVGPAFNDYAVSVKDKLHQGGFCCEVDT
DAGDTMNKKIRNGQLAQFNFILVVGEKEKTNGTANVRTRDNQVHGEKSIDDIIKRFSHLK
ETKSPNSEEPF
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgatatcaagtttgctatttcgacattgcaagcgtgtactcctgctaacacgtcaaaga
agaatgtctgtggaagcaatggcttcatctggcaagggggaagggaagcaagggaagaag
aaaaaggacaaaaaaggaggaggaggaggaggaggaggggctcaacaacatgagctgaat
ccatggccagaatacattcagaatagaattgatctgtttgatagactgaaggctgaagct
gatgctcaatttgcagccaaggttcctgcaccaatcaaagttacattacctgatggtaag
gtagttgatggtcagtcatggcgtactactccatatgaaatagctcaatctattagccaa
ggacttgcagacaatgcagtgattgccaaggtgaatggtgtgctatgggatcttgataga
ccgtttgaagaagacagcaagcttgagcttcataagtttgatagcgaagaaggacaacag
gtgttctggcattccagtgctcatatgttgggtgaagctatggaaagaaagtatggaggg
tgtctatgttacgggcctcccattgagaatggattctactacgattcattccttgatgga
cagcaagtatcaagcaatgattttgatagcatcaaccagattgtaaaatctattcagaaa
gacaagcagccttttgttagacttgagatgaccaaggaagacctgctcaagatgtttgaa
tataatgaattcaagagacgtatcatctcagaacgtgttcaaactcgcactaccacagtg
tataggtgtgggcctctgatcgatctgtgtcgtggtcctcatgttagacatactggaaaa
gtgaaagcctttgatgttgtcaagacttcttccacatattgggagggtaaggctgataag
gagagtttacagaggatctatggcatttcattccctgataataaacagctgaaggaatgg
aaacactttcaagcagaagctgccaagagagaccataggaagattggcagggaacaagag
ttgtttttcttccatgagctgagtcccggcagttgtttcttccaacccaaaggagcattc
atctacaacacactgattgactttatcaggtctgaatacaagaagcgtggattccaggaa
gtagtttcaccaaacatctacaacagtaagctgtggataacatcaggtcactggcagcat
tatgatgataacatgtttcagtttgatgttgagaaggagaggtatgctctcaagcctatg
aactgccctggtcattgtttaatctttgacactcgtccacgttcttggagagagctgcct
ctgagaatggctgactttggtgtgctacatcgtaatgaactatctggcgccctcagtggt
ctgaccagagtaagacgtttccagcaggatgatgctcatatcttctgtcctcaagatcag
attgagcaagagattgctggatgtctagatttcttgtcatctgtatacagtgtgtttggc
ttcacgtacaaactagccttgtctactcgacccgagaaatatcttggagagattgaagtc
tgggacagtgctgagaagcaacttgagaatagtttgaataaatttggagctgaatggaga
ataaaccctgctgatggagccttctatggaccaaagattgacatcacgattcaggatgct
cttcgtcgttctcatcaatgtgcaactatccagcttgactttcagcttcctattagattc
aatctcaagtattcagctgctgatggaactgagaagaggcctgttatcattcatagagct
atcttaggatcagtagaacgtatgattgctatccttactgagaactatggaggaaaatgg
ccattctggttatcgcctcgtcagtgtattgtaattcctgtcggtcctgccttcaatgac
tatgctgtatcagtcaaggataaacttcatcaaggaggattctgttgtgaggtagatact
gatgcaggagataccatgaacaagaagatacgcaacggtcaacttgctcagttcaacttc
atcctcgttgttggtgagaaggagaagacgaacggaacagccaatgttcgtaccagggat
aatcaggtccatggtgagaagtctatagatgatatcatcaagagatttagtcatctcaag
gaaaccaagagtcctaacagtgaagaaccattctaa
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