Lytechinus variegatus (green sea urchin): 121416370
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Entry
121416370 CDS
T11173
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03030
DNA replication
lvg03410
Base excision repair
lvg03420
Nucleotide excision repair
lvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121416370
03410 Base excision repair
121416370
03420 Nucleotide excision repair
121416370
03430 Mismatch repair
121416370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lvg03032
]
121416370
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121416370
DNA replication proteins [BR:
lvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121416370
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121416370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
AAA_22
PTCB-BRCT
BRCT_2
RuvB_N
Rad17
RNA_helicase
nSTAND3
AAA_14
AAA_17
AAA_33
AAA_16
AAA_18
AAA_7
AAA_19
AAA_5
NTPase_1
Motif
Other DBs
NCBI-GeneID:
121416370
NCBI-ProteinID:
XP_041465864
LinkDB
All DBs
Position
1:complement(52661168..52689058)
Genome browser
AA seq
1046 aa
AA seq
DB search
MSMDIRSFFGSPGRGSSAKQSNGKGKRKHDDDDGDFVQSEKKQRHSAKSMKKSNIIYDSD
SDDEPPKTKTPVKPADSKTSKGQAKLPQPTPEKKKPTSVIDFFGSSPVQRSAKKSTRKDQ
PIRNGGSKKPKLEKEEHDDDDFEATLRMMDEDKSPPKEDKKGKGKGLASKLAAKVKAGSL
VPETPDREKPKERPRSVETTIKDTPLSGRQQSRISAKEGKKASPEKRVTRSTPTKATPSR
PPHIKSTTKAKLEISSPPKKKEEVTTSPPAGEGEKKRGNAGYRSYLNREGPRSLGSREEP
KGADGCLSGLTFVVTGVIECFDKDQIKAMIEQYGGRLTGSISKKTNYLVIGREPGESKVA
KAQEFRTKQIQEEELYDLIESRPGKGGSKVKDQQPVKKQQEAQPERKTSKPDTPISKSSP
KDITLKKEPSSSSFYSKSSSSSSSSSLSSSTSQSSKPVSGGDKSAAGNLMWVDKYKPVHT
KNIIGQQGDKSNAKKLLNWLRRWNDNNYGNNKEKAKFNRDDGYAFKAALLSGPPGVGKTT
TATLVCQELDFSYIEQNASDSRGKKSASLQGGIAESLDNQSISDMFKKGCGKKTTDEAYK
HCLIMDEVDGVAGNEDRGGIQELIQMIKTTRTPIICICNDRSHPKIRSLVNYCFDLRFAR
PRIPQIKAAMMSIAFKEGLSLPAASLDGMIMAANQDVRQVLHNLSMWSAGQKKMDAQQMN
IDAKNAKKDLKLGPWDVARQVFSSKDLKTMSFNEKMDLFFHDYSIAGLFVQENYLSVIPD
EGRGDIKKHLDLVSKAADSMCQSDLVEKAIRSRSAWRLLPTQAVFASVIPGTTMQGYMGS
MINFPGWLGKNSTRGKNFRLLQELQVHMRKSASVSIQSLNQEYLPRLRRFLTQPLIEREA
DGVPDTVNLMNSYDLLREDFDSLLEVTQYSGFNAPMGKVAPKVKAAFTRMYNKEAHATPY
MQETGSKKKRGKGGGGAAGTEDGLLKVEGEDDEGTQEEEGSDDDDVSALRAKPKGGGAKG
RGAGSKGKAPAKGKAPVKGKGRGRSK
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggacattcgatccttcttcggcagcccgggaaggggtagttcagctaagcag
agcaatggcaagggtaagaggaagcatgatgatgatgacggagactttgtgcagagtgag
aagaagcaacgccactcggccaaatcaatgaagaaatccaacatcatttatgactctgac
tcggacgatgaaccaccaaaaaccaagacccccgtgaagccagctgattcaaagaccagt
aagggacaggccaagctgcctcagccgaccccagagaagaagaaacccacctcagtgata
gatttctttgggagctcaccggtccagaggtcggcaaagaaatccacaaggaaagatcag
ccaatccggaatggaggatccaagaaaccaaagcttgagaaggaggagcatgatgacgat
gactttgaagccaccctcagaatgatggatgaagacaagtcacctcctaaagaagacaaa
aaaggtaagggtaaagggcttgcaagcaaattggcagctaaggtgaaggcgggtagcctt
gttccagaaacaccggacagagagaaacccaaagagaggccaagatctgtggaaacgaca
atcaaggatactccattaagcggcagacagcagagcaggatatcagcaaaggaaggcaaa
aaagcaagtccggagaagagagtgacccggtcaaccccaaccaaagccacacccagtagg
ccgccacatataaagtctaccaccaaagcaaaactggaaatttcatcccctcctaagaag
aaggaagaggtcacaaccagcccccctgctggtgagggggagaagaagaggggcaatgct
ggctacaggagctatctgaatcgggaggggccgaggtcgttggggtcaagagaggagcca
aagggtgcggatggctgtttgtcgggtttaacctttgtggtcactggagtaatagaatgc
tttgacaaagatcagatcaaggcgatgatcgagcagtacggcggaagactcaccggtagc
atcagcaagaagacaaactatcttgtgattggccgagaaccgggagagtccaaggttgca
aaggctcaagagttcagaaccaagcagatccaagaggaagaactctatgacctgatagaa
tccagaccggggaaaggagggtcaaaggtcaaagatcagcagcctgtaaagaagcaacaa
gaagcacagccagagagaaagacaagcaaacctgacacacctatttctaaatcatcaccc
aaggatatcacactaaagaaggaaccatcatcatcatccttctattcaaagtcatcatca
tcatcctcttcatcatcgttgtcatccagtactagtcaaagttcaaagccagtatcaggg
ggtgacaaatcagcagccgggaacctgatgtgggttgataagtacaaaccagtccatacg
aagaacatcatcggacaacagggagataagagcaatgccaagaaactactcaactggctc
aggaggtggaatgataataactatggcaacaacaaggaaaaagctaaatttaaccgagac
gatggatatgcattcaaggcagctctcctgtctggccctccaggtgtgggtaaaacaacg
acagcaactctggtttgccaggaacttgacttttcttacattgaacaaaatgcgagtgat
tcaagaggaaagaagtctgccagtttacagggaggtatcgctgagtcgcttgacaaccag
tcgatctcagacatgttcaagaagggctgtggaaagaagacgacggacgaggcctacaag
cattgtcttatcatggatgaggtggatggtgtggcggggaacgaagacagaggaggtatt
caggagcttatccagatgataaaaactacaagaacaccgattatctgcatctgtaatgat
cgtagtcatcctaagatcagatctctagtgaattactgcttcgacctgagatttgcaaga
ccaagaattcctcagataaaggctgccatgatgtcgatagcattcaaggaaggtttatct
ctcccagctgcctctctggatgggatgattatggctgctaaccaggatgtccgacaggtg
ttacataatctgagtatgtggagtgcaggacaaaagaagatggatgcacaacagatgaat
atagatgccaagaatgcaaagaaagatctcaagttgggtccatgggacgtagccaggcaa
gtgttctcatctaaagacctcaagacgatgagcttcaacgagaagatggacctgttcttc
cacgattactccatcgctggactctttgtgcaggagaattatctcagtgtaatcccagac
gaaggaagaggagacatcaaaaagcatttagatttagtgagtaaagcagctgacagcatg
tgccaaagtgacttagtggagaaagccataagatcgagaagtgcttggagattactacca
acacaggccgtctttgccagcgtgatcccgggcacgactatgcaaggctacatgggcagc
atgatcaatttccccggctggcttggcaagaactctacaagaggaaagaacttcagacta
ttacaagaattgcaagttcatatgcgaaaaagcgcatcggtttcgatccaaagcttgaac
caggagtacctgccccgcctacgcaggttcctgacacaacccctgatagagagggaggca
gacggggtgccggatacagtcaacttgatgaacagctacgatctgctcagagaggacttt
gacagcctgttagaagtgacgcaatattctggcttcaatgctcctatgggcaaagtggct
ccgaaggtcaaagctgccttcaccagaatgtacaacaaggaggcgcatgcaacaccctac
atgcaggaaacagggagtaagaagaagagaggaaagggaggaggaggggcagcaggaaca
gaagatggtctcttgaaagtagaaggcgaggacgatgagggaacacaggaggaagagggt
agcgatgacgacgatgtcagtgcactgcgggcaaagccaaaaggtggaggggccaaaggt
cgtggagcggggtcaaagggcaaagcacctgccaaagggaaagcccccgtcaaagggaaa
ggaagaggaagatcaaagtga
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