Lytechinus variegatus (green sea urchin): 121416972
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Entry
121416972 CDS
T11173
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121416972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121416972
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121416972
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121416972
RNA polymerase I system
121416972
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
121416972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOW6_SPT5
KOW7_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF7098
S1CSD-TOTE-1
Motif
Other DBs
NCBI-GeneID:
121416972
NCBI-ProteinID:
XP_041466446
LinkDB
All DBs
Position
6:complement(8885741..8917363)
Genome browser
AA seq
1087 aa
AA seq
DB search
MSDSDNSIFSEEEEEEGEESFQKDSDEGSLVGSADEAEEGEEADDGEEEPEDGEDLMSEP
RSDEEDEEEEEDHDGYDHRKKIKKRKVESFIIDEADVDDDYGEDDEEDEWEAGAEALINN
APTDYNDSDQHGARRLTQLFSTQKEDELEEYYKRKYAEGTSTSYRDEDELPDSITQQGLL
PGVKDPNLWMVKCTIGQEKEVAIQLMRKFIAYQNTEEPLQIKSIVAVEGLKGYIYIESYK
QTHVKQAINGVGMLRIGQWTQKMVPIKEMTDVLKVVKETAMLKGKAWVRLKRGVFKDDLG
QVDYVDQTQNQVILKLLPRIDYTRPRGIQRTAQTAAEKRKRRRPEQKLFDLEAIRRIGGE
VTSDGDFLVFEGNRYSRKGFLFKTFAMSAIIAEGIKPTLSELERFEDKPEDIDVELVAKS
KSTKEKSHSFAPGDNVEVVEGELIHLQGKIKSVDGNTILVLPKHEDLKDTLEFPAHELRK
HFKIGDHVKVIAGRYEGDTGLVVRVEENLAIVFSDLTMHEMKVLPRDLQLCQEMSTGVDS
LGQFQLGDLVQLDPQTVGSIVRLEKETFQVLNMHNKLVQVKPQAVTRKKDSRHAVALDAE
QNNLQVKDIVKVIDGPHSGREGEVRHIYRNYAFLHSRLMTENGGVFVVRNRHIVLAGGSR
KSDGGFSTGFAPMSPRITSPMHPSAGPGQQPAGGPGGGRGRGRVGRDRGLIGQTVRITKG
PFKGHIGIVKDATESTARIELHTNCKTINVDRSRMNIVSDQIRSGMTTAYSRNTPMYGSQ
TPMYGSGSRTPMYGSQTPLHDGSRTPHYGSMTPSHDGSMTPSRSGAWDPTAPSTPMGFDE
SSPSPQPYGSTTPGTPGYAGEPQSPGQGPYTPATPNSSSGMYGSESTYSPYGQTQTPSPG
SYQPTPSPSSSFQPAPSPGSYQATPSPSGTYHTPSPGSYQGNPSPLGYSANTPMAPSPLG
YNPQTPGGDIMHPSQIDWHTPEIMVRIKDSHDDPSLIFKEGVIRSVQGPLCSVYLPDGED
RVVTVKAVHLEPVMPSKTDRVKVIMGDDRDSTGTLINIDAEDGIVKMDLGAADIKILQLK
MLAKLYK
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagcgacaacagtattttctccgaggaggaagaagaggagggggaagaaagc
tttcagaaagatagcgatgagggtagtcttgttggaagcgctgatgaagctgaagaggga
gaggaggccgacgacggggaagaagaaccggaggatggggaggatttgatgagcgaacca
cggagcgacgaggaggacgaagaggaagaggaagatcacgatgggtacgaccataggaag
aaaataaagaagaggaaagttgagagtttcatcattgacgaagctgacgttgatgatgac
tacggtgaggacgatgaggaagatgaatgggaagctggagccgaagcactgatcaataac
gctcccacagattataatgatagtgatcaacatggagctcgacgtcttactcagctgttc
agtacacaaaaggaggatgagcttgaggagtattacaagaggaaatatgctgaagggacc
agcacgtcgtatagagacgaagatgagctcccagactccatcacacaacaaggacttctc
cctggcgtcaaagatcccaatctgtggatggtcaaatgtaccattggccaggagaaagag
gtcgcaatccagctcatgaggaagttcatcgcgtaccagaatacagaagagccgcttcaa
attaaatccattgtggccgtcgaggggttgaaaggttacatctacatcgagtcttacaag
cagacccatgtcaagcaagccatcaacggtgtcgggatgttgaggatcggtcagtggact
cagaagatggtccccatcaaggagatgaccgatgtcctgaaagtggtcaaggagactgct
atgctcaaaggaaaagcttgggtcagactcaagagaggggttttcaaagatgacctgggc
caagtggactacgtcgatcagacccagaaccaggttatcctgaaactccttccgcgaatc
gattacacccgaccccgcggcatccagcggacggcccagaccgcggccgagaagcggaag
cgtcggcgcccagagcagaagctgttcgacttggaagcgattcgtaggataggtggagag
gtcacatctgatggtgatttcttggtctttgaagggaatcgctacagtaggaaagggttc
ctcttcaagacgtttgctatgagcgctatcattgccgaaggtatcaagcccaccctgtct
gagttggagagatttgaagacaagccagaggacatcgacgtagaattggttgcgaagagc
aaatcgaccaaagaaaagagtcatagctttgctccaggagacaacgtggaagtggtagaa
ggagaattgattcatctccaaggtaaaatcaagagcgtcgatggaaacaccatcctggtt
ctaccgaaacacgaagatctaaaggataccctagagtttcctgctcatgaattgaggaag
catttcaagattggagatcacgtgaaggtcatcgcaggtcgctacgagggagatacggga
ttggtcgtcagggtggaagagaacctggccatcgtcttttcagatctaaccatgcatgag
atgaaagtattgccaagggatctccagctttgccaagagatgagcacaggagtagattct
ctaggacagtttcagttgggtgacttggttcagcttgatccacagacggttggttcgatt
gtaaggttggagaaagagacctttcaagtactgaacatgcataacaagcttgttcaagta
aagccccaggctgttactcgtaagaaagactccagacatgcagtagcgttggacgccgaa
cagaacaacctacaggtcaaagacattgtcaaggtcattgatggtccgcattcgggcaga
gaaggagaagtcagacatatctacaggaattacgcattcctgcattcccgtctgatgacc
gagaatggaggagtgtttgttgtcaggaataggcacattgttttggctggaggctcaagg
aaatctgatggtggattttcgactggatttgcacccatgagcccacgtattacaagcccc
atgcatccaagtgcaggtcctggtcaacaacctgcaggtgggcctggtggcgggcgtggt
cgtgggcgtgtcggcagagatagaggcctgattggacagacagtgcgcatcacaaaggga
ccatttaaaggtcatatcggtatcgtgaaagacgccaccgaatcaacggctcgtattgag
ctacatacgaactgtaaaactatcaacgtcgacaggagccgaatgaacattgtaagcgat
cagatccgaagtggaatgacgacagcttacagcagaaacacgcccatgtacggctctcaa
acccccatgtatgggagcggttccaggactccgatgtatggctctcaaactccactacac
gatggaagtagaactcctcactatggctcgatgaccccgtcacatgatggtagcatgacc
ccttcaagatcaggagcatgggatcccactgcaccaagcactcctatgggctttgacgag
tcgtctccctcgccccaaccctatggatccaccacccctggtaccccagggtatgctggg
gagccccagtcgccggggcagggaccgtacacccccgctacgccaaacagctcatccggg
atgtacgggagtgagtcgacctactccccgtacggacagacgcagacgccatccccggga
agttaccagcccacacccagtccatcaagcagcttccagcctgccccgagccccggttct
taccaagccaccccgtccccatcgggcacctaccacaccccatcacccgggagctaccag
ggcaatcccagccctctagggtactctgccaacacccccatggccccgtcgcctctgggg
tacaacccccagacaccagggggcgacatcatgcacccctcccagatcgattggcacacc
cctgagatcatggtgaggatcaaggattcccatgacgacccatcgctcatcttcaaggag
ggtgtcatcagaagcgtccagggtccgttgtgttcggtgtaccttccagatggcgaagac
agagtagttacagtgaaagcagttcatcttgagcctgtcatgccaagcaaaaccgacaga
gtgaaggtgataatgggtgatgaccgtgacagcaccggaaccctcatcaacattgacgct
gaagacgggatcgtcaagatggatctgggcgcggccgatatcaaaatcctgcagctcaaa
atgcttgctaaactctataaataa
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