Lytechinus variegatus (green sea urchin): 121417008
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Entry
121417008 CDS
T11173
Name
(RefSeq) nuclear pore complex protein Nup160-like
KO
K14303
nuclear pore complex protein Nup160
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121417008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121417008
03036 Chromosome and associated proteins [BR:
lvg03036
]
121417008
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121417008
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121417008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NUP160_120_M
TPR_Nup160_C
Beta-prop_Nup120_160
NUP160_helical
HEAT_Nup120
TPR_NUP120_160
TPR_2
TPR_1
Motif
Other DBs
NCBI-GeneID:
121417008
NCBI-ProteinID:
XP_041466479
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All DBs
Position
6:11945325..12019240
Genome browser
AA seq
1428 aa
AA seq
DB search
MALSTSFQEILILRGETHRWKDLTINSGGTQGVLQDVNVADSAGGFTYKDSHKVNSVTAN
RFIYWRTSQNRVELVESSLNHNLHGNALRLNFQGSPIIPRVSIHETHSHVVILIATFTSV
HRLPFPHPNKLTRQDTNAQLSGSDLASIFADASVTNFRDASNMHEIVQSGSQTYEFQACG
SWLTADGEAWFALSVRTGSLVLVKMAPLGLRGITTQNEVKESSIMERLWTGLVPVSIRRD
QDAIYLAQSVAVRPLGQDMMAFCVCRDHKLRIWSCKNLNCLITSDLTSFLPEGMMGMDDQ
PILRHEIRVIQGSTISSLTLGVYLTISHFSLFLILEQRWQDGQCRLCHVTTLDDVKGQTL
VDFTMTSSHVVAMWGLPDGRTVVKSTCYSKQRTEGWLPVYLETDQLTSVQVPSFLDPREA
YLDHIFKPGRFSVQTILKALHTYSRSTGSDLGSLMEVDLPDPSVLRQDASIVVETEIQQR
VGGGEVSQGEYRQLVEQSMSKFLACCVEYHQVANKPLGFFLDSNTHMPCLIKRNLISVLQ
PVGLVEDIHMGIKRVFSMEDLGLELSDQDPTIIQDIQSLQECINLLSSSSVAMEMQGFVD
SLMQLQPPMDIAQKLASSIIISNGPQNQVIREQVSQALSRIMDPTGVFRTVLHLVDVAGG
EPENLLAELSHLGQGIAHSPTHHTLSSDLSVVCMAAGFARFSQLRLEFMQFLLVLECLIL
RLESQLPWSAECIKKLTCDVIPETCTILQAYHSLFWVSSCVSSPVQTKTVEFHLRQMAVL
EISTDNSQTSPSSSWTSPPSPTLVELFLQGSGGSYVRSILAKRANRRAEGLQDWGKFFPG
AVKALAQLIWPISANFLFAEYLMSKCQYTQLQGYIRLLSPWCEWNAASRQFLRAHCYLNT
GEPVKALGCFQEASQRIGAEDFLLNRLLRTTELQGKKLETLYHLKVIGLLEQFELRELVI
SLAKTALSAADTDDPNLPTLWVKIFKYHLELGHNDEAYSAMTSNPDPERRRDCLRQFVVV
LCEQGRMKQLCQYPYIDLHDEIVGIIESRARSVDLLTINYYDLLFAFHTIRGNYRQAGSV
MYEQATRLAQEIVGVESLKRQESCYLTAMNSLRLLHTDNAWIVKPAASEMEGIKTEDMNG
LSPKRDYEGTPLSDPVPRRKVDVLELGDLEKEYQLISAKIKLANHQPDMAHVTTSKMSVD
ETVSFLVQSGLYDTAIDVCKTFRLPLSPVFESLAHRCVKLSRNGADSGSWKWLASNDIGS
LNLGREATAAELAWHLLQMYLERYDQKGDHMNYRIVIKKLLSLGFQLPQWVINSYKKLDP
GNLLFLYITFDLLEEAANLGVEFIDAVLGRGMEYFGLKNPIRPTDPSVWLPYTHLDHLLN
ALRETRNDPELIKLHNVLKSKLDEYHRNAASISKEMISIAHTKQQIGR
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcgctctccacatcttttcaagagatcctgattttgagaggagaaacacaccgttgg
aaagatcttacaataaattcaggcggcacacagggtgtccttcaagatgtcaatgtcgct
gatagcgctggagggttcacttacaaggacagccacaaggtcaacagtgtaactgctaat
agatttatttattggcgtacgtcccagaaccgcgtcgagctggtcgagagctccctgaac
cacaatctccatggcaacgctctgcggctcaacttccagggttctcccatcatcccgcgg
gtgtcaattcatgagacccattcacacgtggtgatactcatcgctacgttcacatcagtc
caccgtcttccgttcccgcaccccaacaagctgacgaggcaggataccaacgctcaactc
tcaggctccgaccttgcctcaatctttgccgatgcttcggtgacaaacttccgtgatgca
tccaatatgcatgagattgttcagagcgggtcacagacctacgagttccaggcttgtggg
tcttggttaactgctgatggcgaggcctggtttgcgctctctgtgaggactggaagtctg
gtactagtcaagatggctcctctaggcttaaggggtattactacacaaaatgaagtcaag
gaatcttctattatggagcgtttatggacaggacttgttccagtctctatcaggagagac
caggacgctatctacctagcccagagtgtagctgtccgtcctctaggccaggatatgatg
gctttctgcgtttgccgggatcacaaactaaggatctggtcctgcaagaacttgaattgc
cttatcaccagtgatctaaccagcttcctgccagagggcatgatgggaatggatgatcag
ccaatcctgcgtcacgagattcgggtcattcaagggtcaacgatctcaagtctgactctc
ggtgtctacttaaccatctcacatttttcgctgtttctgatactggaacagcgatggcag
gatggacaatgccgtctgtgccatgtgaccacgttagacgatgtcaaaggtcaaacactg
gttgacttcacaatgacgagctcccatgtcgtcgctatgtggggtttacctgatggtcgc
actgtggtgaagagtacatgctattcaaagcaaagaacggaaggatggctacctgtatac
ctggaaactgaccagctgaccagtgtccaagttccatcatttctcgaccctcgggaagcc
tatttggatcacatctttaagcctggaaggttctcggttcaaaccattctcaaagctctt
catacatacagccgttcaactggctcagatctcggaagtctgatggaggttgatcttccc
gacccttcggttctgcgtcaggatgcgtccatcgtcgtggaaacagagatacaacagagg
gttggcggaggggaagtatcccagggggagtacaggcaactggtggaacagagcatgagc
aagtttttagcatgttgcgtggaatatcatcaagtcgccaacaagccattagggtttttc
ttagattctaacacacacatgccatgcctcatcaaaagaaatctgatatcagttcttcag
ccagtaggtctggtggaggacatccacatgggaatcaagagagtgtttagtatggaagat
ctgggattagaactgtctgatcaagaccccaccatcatccaggacatccaatcactccag
gaatgcatcaatcttctctcatcgtcttccgttgccatggaaatgcaaggattcgtagac
tctctcatgcagctccagcctccgatggatatcgcccagaaactcgccagcagcatcatc
atatcgaatggtccacagaatcaagttataagggagcaggtttcacaagctcttagtagg
attatggacccaacgggagttttcagaacagttcttcaccttgtcgacgtcgcaggaggt
gaacctgaaaatcttctcgctgaattgagtcatcttggccaaggcattgcccatagtccc
acacaccatactctgagtagtgacctctctgtagtctgcatggctgcgggcttcgcaagg
ttctcccaactcaggctggaattcatgcagtttcttctggttctcgagtgtctgatcttg
agactagaatcgcagctaccatggtctgctgaatgcattaagaagttaacctgtgatgta
ataccagaaacgtgcaccatcctccaagcctaccactctctattctgggtgtcatcctgt
gtgtcaagtccagtacaaacaaagactgtggaatttcacctgaggcagatggcagtcctt
gaaatctccacagacaacagccaaacctccccgtcttcatcgtggactagtccaccctca
cccaccctggttgagttgttcctacagggaagtggagggagctatgtccgttccattcta
gcaaagagggcgaacaggagagcggagggactgcaggattggggtaaattcttcccagga
gcagtgaaggcactggctcagttaatctggccaatcagtgccaacttcctgtttgcggag
tatttgatgtcaaagtgccagtatacacaactacagggttacatccgtctcctgtcgcca
tggtgcgagtggaacgcagcgtcccgtcagttcctacgagctcactgctacctgaacacc
ggtgagcctgtcaaagccttgggatgcttccaggaggcgagtcagagaataggagcagag
gatttcctgctgaataggcttctaagaactacggagctacaggggaagaagctggagacc
ctttaccatctgaaggtgattggtctgctggagcagtttgaattgcgagagcttgtgatc
tcattggctaagactgctttgagtgctgctgatacagatgaccccaatctgccaaccttg
tgggtgaaaatattcaagtaccatcttgaactgggtcacaatgatgaggcttactcagcc
atgacctctaaccctgaccctgaaaggaggagagactgtttacgtcagtttgttgtggtt
ttatgtgagcaaggacggatgaaacaactctgccagtatccctacattgatcttcatgat
gagattgttggcatcattgagtcgagagctcggtctgtggatctattaactatcaattac
tatgacctgctctttgcattccatacaataagaggcaactatagacaggctggtagcgtc
atgtacgagcaagcgacccgactggctcaggagatcgtcggggtggagagcctgaagaga
caagaaagctgctacctcactgccatgaattcacttaggttgctacatacggataatgct
tggattgtcaaacctgcagccagcgaaatggaaggcattaaaactgaggacatgaatggg
ctatcacccaagagagactatgagggcacccctctcagtgacccagttccaaggcggaaa
gtcgatgttctggagcttggcgatttggagaaagagtaccagctgatatctgctaagatc
aaactagccaatcaccagcctgatatggctcatgtgacaacttctaagatgtctgttgat
gaaacggtgagcttcttggttcagagcgggctctatgacacagccattgatgtttgcaag
acattcaggttgcctctcagcccggtgtttgaaagcctggcccatagatgtgtaaaacta
tcccgcaacggagcagacagcggcagctggaaatggcttgcttcaaatgacatcggctcc
ctaaacctaggtagagaagcaacagctgcagaacttgcctggcatctcttacagatgtat
ctagagaggtatgatcaaaagggtgaccatatgaattacaggattgtgatcaagaaacta
ctctctcttggctttcaacttccacaatgggtcattaattcctacaagaaactggaccct
ggcaatctgctcttcctgtatataacctttgaccttttggaagaagctgccaatttagga
gttgagtttattgatgctgtccttggaaggggaatggaatactttggtctcaagaacccg
atacgtccaacggatcccagtgtgtggcttccatatactcacttagaccatcttttaaat
gccttgagagagacaagaaatgatccagaacttatcaagcttcacaatgttctgaagagc
aagctggatgagtatcacagaaacgctgcatcgatctcaaaggagatgatatcgatcgct
cacacaaaacagcaaataggacgatga
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