Lytechinus variegatus (green sea urchin): 121417226
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Entry
121417226 CDS
T11173
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3-like
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lvg04121
]
121417226
Enzymes [BR:
lvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121417226
Ubiquitin system [BR:
lvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121417226
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-C3HC4
Beta-prop_THOC3
Beta-prop_EML_2
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
Beta-prop_WDR5
zf-C3HC4_3
zf-RING_5
WDR55
Beta-prop_WDR3_2nd
zf-RING_Vps41
WD40_Prp19
zf-C3HC4_4
Beta-prop_RIG_2nd
zf-Nse
DUF7099
zf-UDP
Beta-prop_IFT122_1st
zf-ANAPC11
WD40_2
FYVE
Rtf2
zf-RING_16
zf-RING_11
Beta-prop_TEP1_C
CFAP43_N
Motif
Other DBs
NCBI-GeneID:
121417226
NCBI-ProteinID:
XP_041466787
LinkDB
All DBs
Position
6:22409330..22439264
Genome browser
AA seq
746 aa
AA seq
DB search
MDHSDSDEDDNGSTILIESDQELYDSDATEISEDEHHQEQEGGLSPTRLGQEEGRDSSHP
ADPSQGQGSQSDSESLLMLPHQRSENRLDPVESRQDRVPDVDIPGPSGLQTFRTSQSAAS
SNAHADEPRTSDQSQPRIASSSQGTLESGGNGSPSNVDGGQRLSDAPQGHSSSDALRGQS
SNDDGAQLPNSTDPQSTATNQRPEANDMHGASANQDEDDDEPMETMTEDESSNDSMADFQ
EPKKPGAGACKSGSDGSGSDDESQSCIICYEPWTTSGSHRLVSLRCGHLFGQSCIEQWLK
GQGGKCPQCNSKAKRSDVRVIYAKALKVLDTSERDRALKELEREKELRKKAEMDAAQTQL
RYVMALEEVKRMKAIFESHQQSTSRNPLSTISSSSNQQSHGRPAGQYMLDKTIQVSPNGN
CRVMTYDAANQLLLASMPSTNVLFQGFGLKKISAMDFKSCQYIPIHGKPIRGLSLSGRDD
GLLLSASVDKMLKITSLASNTVVQSYTCPMPAWCCAWNTTNTNYVYAGLQNGTVVIYDTR
KTDTEVKTLTKEGSRCPIVSLKYVPSKAGDPLPCGGILIGTLEGASFWEQLSCEEYRIHK
LHLEGSCTGVAFEPLTRHCLASFRPTKNHRSARYVMCEMKRQSVGDQGNSLVSCNSVQTF
FGGTTMKLLTQSALFPAPHDDNKLIACAGDEATSSVFTWDASSGSLTQKLPIGSTALDVC
PFNLGDTSYLAALTDKQIKLCKWVQR
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggatcacagcgattctgatgaagatgataatggttcgaccatcctcatcgaaagtgat
caagagctatacgattcagatgctacagaaatatctgaggatgaacaccatcaggaacaa
gagggaggtttatcaccgacaagacttgggcaggaagagggacgtgattcatcccatccc
gctgaccctagtcaaggtcaagggtcgcaatcggacagtgaatcacttctgatgcttcct
caccagagaagtgagaaccggttagatccagttgaatccagacaagacagagtgcctgat
gtggacattcctgggcccagtggcctgcaaactttcagaactagccaatcagctgccagc
tcaaatgcacatgcagatgagccaagaacttctgaccaatcacagccacgaatagcttca
tcttcccaaggaactttggagagtggtggtaatggatctccatccaatgttgatgggggt
caaaggttatctgatgctcctcaaggacacagctcctccgatgctctgaggggtcaaagt
tcaaatgatgatggagcgcagctaccaaatagcaccgaccctcaaagcacagcaaccaac
cagaggccagaagctaatgatatgcatggagcatcagccaatcaggatgaagatgatgat
gaaccaatggagacaatgacagaggatgaaagtagtaatgactctatggctgactttcag
gaaccaaagaaaccaggagccggtgcttgcaaatcaggaagtgatggcagtggtagcgat
gacgaatctcaatcgtgtattatctgttacgagccgtggacgacgtctggctcacatcgt
cttgtttcacttcgctgcggccatctttttggccagagctgtattgagcaatggctgaaa
ggccaaggtggtaaatgcccacaatgcaacagcaaggccaagaggtccgatgtccgagtg
atctacgccaaggcactcaaagttcttgatacatccgagcgggacagagcactgaaagag
cttgaaagagagaaagaactaagaaaaaaggcggagatggacgctgcacagacgcagctt
aggtacgtcatggcactggaagaagtgaagaggatgaaagcaatctttgaatctcatcaa
cagtcaacatcacgaaatccactgtctaccatatcatctagtagcaaccagcaatcacat
ggcaggccagctggtcagtacatgctagacaagacgatacaagtatcaccgaatggtaac
tgtcgtgtgatgacttacgatgctgccaaccaacttcttctagcttctatgccctcaact
aatgtactctttcaaggatttggattaaagaagataagtgcaatggacttcaagtcatgt
caatatattcctatccatggcaagccaatccgtggattgtctttgagtggacgagatgac
gggcttctccttagtgcatcggttgataagatgctcaagattacaagtctagcaagcaac
acagtcgtacaatcgtacacctgccccatgcctgcctggtgctgtgcatggaatacaacc
aacaccaactacgtatacgcgggactacagaatggaacggttgtcatttacgacactcgt
aagacggacaccgaggtcaagaccttgaccaaagagggttcaaggtgtcccattgtgtct
ctgaaatatgtaccaagcaaggctggtgatccccttccttgtggaggaatactcattgga
actctggagggtgcttcattctgggagcagttatcatgtgaggagtataggattcataaa
ctacatcttgaaggaagttgtacaggtgtagcatttgaacccctaaccagacactgcctg
gcttcattcagacctaccaagaatcaccgctcagctagatatgtgatgtgtgagatgaaa
agacagtcagttggggatcagggcaacagcttagtctcgtgtaactccgttcaaaccttc
tttggtggaactacaatgaaactgcttacgcagtcggctctattccccgcaccccatgat
gacaataaattaattgcatgtgctggagatgaggccacatcatcagtatttacctgggat
gctagttcaggcagcctcacccagaagcttcccatcgggagtacagccctggatgtatgt
ccattcaacctaggagatacaagctaccttgctgcattgaccgataaacagattaaactc
tgtaaatgggtgcaacgatga
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