Lytechinus variegatus (green sea urchin): 121417255
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Entry
121417255 CDS
T11173
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121417255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121417255
03036 Chromosome and associated proteins [BR:
lvg03036
]
121417255
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121417255
Coactivators
SAGA/TFTC/STAGA complex
121417255
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121417255
STAGA complex
121417255
TFTC complex
121417255
SAGA complex
121417255
SLIK complex
121417255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
PROPPIN
WD40_like
Beta-prop_Vps41
PEP5_VPS11_N
WDR54
Beta-prop_NWD2_C
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
121417255
NCBI-ProteinID:
XP_041466831
LinkDB
All DBs
Position
1:55071281..55088187
Genome browser
AA seq
603 aa
AA seq
DB search
MKRVSNDQIQSAVLQHLKRRQYIDINSESVNRKNLKLTDSLREMASQSSRRKEMGAINSV
SCNSCDQDGDVFEQQFARFRLFIESSVDEYKLDLLRLLYPTFAHIYLQMISDGHRVNAHN
LYTKHKGCIQYQDSLDTKELMERLSSVQYSIDPLTDPYLAAFRDNKCVVEIGDDAVQYLL
RFLQSRDNSVLLSIINLHIDIKVRYSVPTSLQEGGEEYPQASSSSSSLSSASKQTSETPK
KEDNKREVEREAFLSELRATIDKVQRGPPSVPSIILYSVLNAYQGLSCVSFSDDSQMLAG
GFEDSAVRLWSLTPKKLKTQSHDADVSRVRFAGDSLHSNIIEDSLGSDCKLLRGHSDTVY
SSCFIPETPLLLSASGDATVRAWSMSTFSNIARYRGHKYPIWDLDVSPLGVYFCTASKDQ
TARLWTPERTYPVRVLSGHLMDVDCVKFHPNCKYVATGSNDKTIRLWDITQGKSVRLLTG
HKSSVLCIAFAPNGKYLASAGEDRRVRVWDLATGGLMKELRGHTDTVYSLAFNPDSSMLA
SGGADCTIRLWDIRQGVKHTVPESGGHSGEQMTSISSRQTHIHKLSFSKCNLLLAGGGIA
MAT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtgtaagcaacgaccagatccagtctgcagttcttcaacatctgaaaagaagg
caatatattgatatcaacagcgagagtgtgaatcgcaagaacctcaaactgacagattca
ttgcgagagatggcttctcagtcatcaaggaggaaagagatgggagcaatcaactctgtc
tcgtgcaattcatgtgatcaagatggtgatgtctttgagcagcaatttgccagatttagg
ctcttcatcgagagttcagtagatgagtataagttggacctcttgcgcttgctgtaccca
acatttgctcatatttatttgcaaatgatctctgatggacatagagtaaatgcccacaac
ctgtatacaaaacacaaaggatgtatacaatatcaagatagtctagatactaaggagttg
atggagagattaagcagtgttcagtatagtatagatccattgacggatccttaccttgct
gcatttagagataataaatgtgtggttgagattggagatgacgccgtccagtacctacta
cgcttcctccagagtcgagataattctgttctactcagtatcatcaacttgcacattgat
atcaaagtgcgatattcggtacccacatccttgcaagaagggggtgaggagtatccacag
gcatcttcttcatcatcatcgctgtcctccgcctcaaaacaaacctcagagacacctaag
aaagaagataataagagagaagtggagagagaggcttttctttctgagttacgagcgacc
attgataaagtccagagaggaccgccatctgttccctccatcatcttgtatagtgtcctc
aatgcatatcaagggttgagttgtgtgagtttctcggatgattctcagatgctagctggt
ggctttgaggattctgccgtcagattgtggagtcttactccgaagaaactcaaaacgcaa
tcccacgatgctgacgtcagtcgcgtccgcttcgccggtgatagtctccatagcaacatt
atagaagatagtcttggatcagactgtaagttactacgaggtcacagtgatactgtttac
agtagctgcttcataccagagacacctcttctcttatcggcatcaggagatgccacagtt
agagcatggagtatgagcaccttctcaaacatagccaggtatagaggacacaagtaccct
atctgggaccttgatgttagcccgcttggggtctatttctgtactgcctccaaggaccag
acggccagactctggactccagagaggacctatcctgttcgggtactctctggtcatctc
atggatgtagattgtgtcaagttccatcctaactgcaagtatgtagcgacaggttctaat
gacaagacgattcgactgtgggacattactcaaggaaaatctgttcgtttattgacagga
cacaagagttctgttttgtgcatagcttttgctccaaatgggaagtaccttgcatcagca
ggtgaagatcgtagggttcgtgtttgggacctggcgaccggaggtttgatgaaagaactc
agagggcacacagacactgtttattcgttagcattcaaccctgatagctcaatgcttgcc
tcgggtggtgcagattgtactataagattgtgggacatacgacagggtgttaagcataca
gtacctgagagtggaggacattctggagaacaaatgacatcgatctcttcaagacagact
cacattcacaagctatccttttctaaatgcaacctcttactcgcaggcggaggtatcgcc
atggcaacatga
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integrated database retrieval system
