Lytechinus variegatus (green sea urchin): 121417264
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Entry
121417264 CDS
T11173
Name
(RefSeq) E3 ubiquitin-protein ligase RING2-like
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121417264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lvg04121
]
121417264
03036 Chromosome and associated proteins [BR:
lvg03036
]
121417264
Enzymes [BR:
lvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121417264
Ubiquitin system [BR:
lvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121417264
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
121417264
Noncanonical PRC1 (PRC1.1)
121417264
Noncanonical PRC1 (PRC1.3/1.5)
121417264
Noncanonical PRC1 (PRC1.6)
121417264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAWUL
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-Nse
zf-RING_5
RING_XB3-XBAT31
zf-C3HC4_4
zf-rbx1
zf-RING_4
zf-RING_6
zf-UDP
TRAF3_RING
DUF3337
Motif
Other DBs
NCBI-GeneID:
121417264
NCBI-ProteinID:
XP_041466836
LinkDB
All DBs
Position
6:complement(25617708..25630174)
Genome browser
AA seq
396 aa
AA seq
DB search
MAVTQASGNSQPSKSWELSLYELHRSPQEAITDDTEIAVSPRSLHSELMCPICLDMLKNT
YTTKECLHRFCQDCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE
AHQERVLAKLNKRHNATALSSSIEEGLKVQALNRAQRVPPKRKPEFNLAGGELPPDDSAL
DPAQCGGGGDGDLNGDPQAPAGPEGLSLAPPPSAPLTPPSESPQEERRLMRSHSEDLSSS
QGCNSFQDRDSLQAMKRARTSDDSSSCGDVEGEGEGSIDLPDPSNEIELVFKPHPDEVNH
MFPYMVRYLKTSALASIDHLAKYLSMRIALELRDAGSMDSQSSSNQNEGNCGEFTIFISP
SPCQFQPLNGNLTLEQVNERHWKVNRPLEMYFLGKK
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggctgttacacaggcaagtggaaattcccaaccaagcaaatcatgggaattgagcctt
tacgagcttcaccgatccccgcaagaagcgatcaccgatgacaccgagatcgcagtgtct
ccccggagtctacacagtgagctgatgtgccccatatgtcttgacatgctaaagaataca
tataccaccaaggaatgcttacatcgtttctgccaggattgcatcatcacagcgcttcga
agcgggaacaaggagtgcccgacctgtcgtaagaagctcgtctccaagaggtctctgcgg
ccagaccccaatttcgacgccctcatctcaaagatctatcccagcagagatgaatacgaa
gctcatcaggagagggttttggccaaactcaacaagagacataatgctactgctctgagc
tctagtattgaggaagggctcaaggtacaagctttgaacagagcgcaaagagttccacca
aaaaggaaaccagaattcaaccttgctggtggcgagctacccccagatgactccgccctt
gaccccgcccagtgcggaggtggtggtgatggggacctgaacggcgaccctcaagcaccg
gcaggcccggagggattatcccttgcccctcctccctctgcacccctgacacccccgtcg
gaatcccctcaggaggagaggagattaatgagatcgcattcggaggatttatcatctagt
caagggtgcaattcattccaggatcgggattctctccaggcgatgaaacgggcaagaaca
tcggatgattccagtagctgtggagacgtggagggagagggcgagggtagtattgactta
ccagacccatctaatgagatagagttggtttttaagcctcatccagatgaagtcaaccat
atgtttccttacatggtgagatacctcaagacatcggcccttgcttcaatagatcaccta
gccaagtacctgtctatgaggatcgctctcgaactaagagatgctggttcaatggatagt
cagagttcgtccaatcaaaacgaaggaaattgcggagagtttaccatcttcatcagtcca
tcaccgtgtcaattccagccattgaatggtaacctaaccctcgaacaggtcaacgagaga
cactggaaagttaataggccattggagatgtactttcttggtaagaagtga
DBGET
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