Lytechinus variegatus (green sea urchin): 121417414
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Entry
121417414 CDS
T11173
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC2-like
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121417414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121417414
Enzymes [BR:
lvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121417414
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
121417414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5981
Motif
Other DBs
NCBI-GeneID:
121417414
NCBI-ProteinID:
XP_041467045
LinkDB
All DBs
Position
6:complement(35979737..36018484)
Genome browser
AA seq
1164 aa
AA seq
DB search
MLTAAERQEVRVMSSRSKSRESVLKDESNEDDTEEKMEIDKEELSAPIKAVQDKWKLLPA
FLKVRGLVRQHIDSFNYFINVEIKKIMKANEKITSDADQTFYMKYLNIYVGSPDVEESFN
ITKPTSPHECRLRDMTYSAPITVDIEYTRGQQRVIRNNLPIGRMPIMLRSSNCVLTGKSQ
AELAKLNECPLDPGGYFIVRGTEKVILIQEQLSKNRMIVEVDRKGIVSCNVTSSTHERKS
RTVVIVKKGRHYLKHNTFTEDIPIVVVFKALGMESDQEIVQTIGTEESTMVSFAANLEEC
HRLQVYTQLQALKYMGSKVRQRRMWGGGSKKTKVDEARELLATTILSHIPVVQFNFRAKS
IYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELAGQLIALLFEDLFKKFNSELKKYADQN
IPRPRAAQFDIVKYMRQDQITNGLVTAISTGNWSVKRFKMERAGVTQVLSRLSYISCLGM
MTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLIKNLALMTHITTDMEEAPI
VRLAFNLGVEPVQLMXGEELSMKDVYVVFLNGNILGVIREHERLMRTFRLVRRAGYISEF
VSICPNHAQRCVYIASDGGRVCRPYIIVEKCIPRVTDKHMVELSQGFRSFEDFLREGLVE
YLDVNEENDSLVALYESHITKETTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGK
QAMGTIAYNQRNRIDTLMYLLAYPMAPLVKSKTIDLIGFDKIPAGQNAVVAVMSYSGYDI
EDALILNKASVDRGFGRCLVYRNTKCTLKRYANQSFDRLMGPKLDPLSRQPIWRHRILDA
DGVCAPGERVTNKQVLLNKSMPVVNMNPLQASPTNQPQQHDYREVPITYKGAADSYIEKV
LVTSNPEEAFLFKVLLRQTRRPEIGDKFSSRHGQKGVCGLIVQQEDMPFDERGICPDIIM
NPHGFPSRMTVGKLIEFLAGKAGVLEGKFHYGTAFGGDKVVDICEDLRKHGFNYLGKDFL
TSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRARDGGLRLGE
MERDCLIGYGASMLLLERLMISSDQFQVDVCGECGLIGHSGWCPYCRCSQNISSLRIPYA
CKLLFQELQSMNIVPRLKLKKYTE
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgttgactgctgctgagaggcaagaagtacgagtgatgtcttcccgatcaaaatcgaga
gaaagtgttttaaaagatgaaagtaatgaagatgacactgaagaaaaaatggagattgac
aaagaggaactgtctgcacctataaaagctgttcaggataaatggaagcttcttccggcc
ttcctgaaggtaaggggtttggtccgccagcacatagactcattcaactacttcattaat
gtggagatcaagaagataatgaaagcaaatgagaagattaccagtgacgctgaccaaact
ttctacatgaagtacttaaacatttacgttggtagccccgacgtcgaagagagtttcaac
atcaccaagccaacctctccccacgagtgtcgtctacgtgacatgacttactctgccccc
atcactgtcgacatagagtacacacgagggcagcagagggttatcagaaataaccttcca
atcggaaggatgccgatcatgctgcggagctccaattgcgtgctgaccggcaagtctcag
gccgagctggccaaactgaacgagtgtcctcttgaccccgggggctacttcatcgtccga
gggacagaaaaggtcatcctgatacaagaacagctctcaaagaataggatgatagtggaa
gtggatcgaaaaggcattgtttcctgcaatgtaaccagttctacacacgagaggaaaagt
cgaactgtggttatcgtgaagaaaggcaggcattacctgaaacacaatactttcacagag
gacattccaattgtggtggtcttcaaagcgttggggatggaaagtgaccaagagatcgtc
cagaccatcgggacggaagaatctacgatggtcagttttgccgctaacctggaagaatgc
catagattgcaagtctacacacaactacaggctctgaagtatatgggaagtaaagttcgt
cagaggaggatgtggggaggaggatccaagaagaccaaagtagacgaagcgagagagtta
ttagctactacaatcctttcacatatacctgttgtccaattcaatttccgagcaaagagc
atctatcttgctttgatggtgaggagagtgatagaagcacagggtgatgcggtcaaggtt
gatgacagagattactatggcaacaagaggttagagttggctggtcagcttatagcactt
ctctttgaggatctcttcaagaagttcaactcagaactcaagaagtacgccgatcagaac
attccgcgtccccgggcggctcagtttgatatcgtcaagtacatgagacaggaccagata
actaatggacttgtcacagctatatccactggtaattggtcagtgaagcgttttaagatg
gagagggccggagtgacgcaggttttatcaagactctcatacatctcttgccttggtatg
atgaccagaatatccagtcagtttgagaagaccagaaaagtgagtggtccccgctccctt
caaccgtcccagtggggtatgctttgcccatctgatacccctgaaggagagggatgcgga
ttgattaagaatcttgctcttatgactcacatcactacggacatggaggaggcccccatt
gtcagactagcgttcaacttaggggtggagcctgtccagctgatgntcggggaggagctt
agcatgaaggatgtctatgttgtatttctcaatggtaatatcctgggtgtgatccgggag
catgagcggttgatgcggacgttccgtcttgtgaggagggctgggtatatcagtgagttt
gtttctatctgtccaaaccacgcccagaggtgtgtctatatagcatcggatggaggcagg
gtgtgcaggccttacattattgttgagaagtgcatcccgagggtgacggacaagcacatg
gtagagctctcgcaaggcttccgaagctttgaagatttcctacgagaggggctcgtagag
tatcttgacgttaacgaggagaacgacagtctggtggcgctctatgagtcacacataaca
aaagagacgactcaccttgagatagaaccattcaccattcttggtgtgtgcgctggactg
atcccctacccccaccacaaccagtctcccaggaacacctaccaatgtgcaatgggcaag
caagctatgggtaccatagcttacaaccagcggaatcgcattgacactctgatgtacctc
cttgcctatccaatggctcctctcgtcaaatctaagacgatagatttgatagggtttgac
aagattcctgcgggtcagaatgccgtggtggccgtcatgagttacagcgggtacgacatc
gaggacgccctcatcctcaacaaggcttcggttgacagaggttttggtaggtgtttggtg
taccgcaatactaagtgtacattgaaacgttacgctaaccaatcctttgatcgcttgatg
ggaccgaagcttgatccgttgtcacggcaacccatctggaggcaccgcatcctggatgca
gatggagtgtgtgctcctggagagagggtcacaaacaaacaggtgttgctgaataagtct
atgccagtagtgaacatgaatcctctgcaagcaagcccaaccaaccaaccccagcagcac
gactacagagaagtcccaataacgtacaagggggctgctgattcctatattgagaaggtc
ttggtgacctcaaacccggaagaagcattccttttcaaggttctcctgagacagacgagg
agacctgagattggagataaattcagcagtagacatgggcagaagggagtgtgtggactt
attgttcaacaggaagacatgccgtttgatgagagagggatctgtcctgatattatcatg
aacccccatggcttcccctcccgtatgacagtgggcaagctcatcgagttccttgcaggc
aaggctggtgtactagaaggaaagttccattatggtacagcgttcggcggagacaaagtt
gtagacatttgtgaagaccttaggaaacatggtttcaactatctcggaaaggacttcctt
acatccggtattacaggggagcccctgacagcttacatctactttggccctgtctattat
cagaagctaaagcacatggtcctagacaagatgcatgccagggctaaaggaccaagggct
gtcttgacgaggcagcctacagaaggaagagctagagatggaggcttgcgattgggcgag
atggagcgtgactgtttgattggttacggggcgagtatgctgcttcttgagcgtctgatg
atttcaagtgaccagttccaagtggacgtctgtggggaatgtggtctgataggtcattct
ggatggtgtccatactgccgttgctcccaaaacatatcatctttgaggataccctacgca
tgcaagctcctcttccaggaactccaatcaatgaacattgttccaaggttaaagctcaag
aaatacacagaatga
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