Lytechinus variegatus (green sea urchin): 121417434
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Entry
121417434 CDS
T11173
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121417434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121417434
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121417434
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121417434
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121417434
U7-dependent histone pre-mRNA processing factors
121417434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
121417434
NCBI-ProteinID:
XP_041467082
LinkDB
All DBs
Position
6:complement(37889235..37909704)
Genome browser
AA seq
690 aa
AA seq
DB search
MAAKRKPDAQIPEEESDRLIVRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGRDGMDSL
PYFDLIDPEEIDLLLVSHFHLDHCGGLPYFLKNTQFRGRVFMTHASKAIYRWNLSDYVKV
SNLSAERMLYTDADLQTSMDRIETVNFHQEVDLNGIRFSCFHAGHVLGACMFLIEIAGVK
ILYTGDFSRQEDRHLMQAELPNIKPDILITESTYGTHIHEKREDREARFTSTVHDIVNRG
GRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYIDAMNEKI
RRQINVSNPFVFKHISNLRGMDHFDDVGPSVVMASPGMMQSGLSRELFENWCTDRRNGLI
IAGYSVEGTMAKHVMSSPEEIQTLSGQKVPLKMSVDYISFSAHADYEQTSEFIRALKPPQ
IVLVHGEANEMSRLKAAILREYEDDDEYNIQVHNPRTTQAVELYFRGEKMAKVMGSLAAQ
RPRHNSKISGILVKRNFNYHIMAPSDLSEYTDLAVSNVTQRQSIAYHAPLSLLTHYLTQL
STDLEYTELNDKPALRIFGEINIVHDPAARIITLEWVANAENDMYADAVMTVVVRVASDP
DAQKFKQLPAKNDSQVFSERLMVLLRDMFGQSTVTNFPDSDDLLVCMDGKEAQVNIESLE
VKSEDKQLKSMVTTAMKRLHEAIDPVAIVS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaaagaaagccagatgcgcagatcccagaggaggaaagtgaccgtttgatt
gtccgaccattgggtgctggacaagaggtcgggaggtcatgcataatgctcgaattcaag
ggaaagaaaattatgcttgactgtggaatccaccccggtcgtgatggcatggactctcta
ccttactttgatctcattgaccctgaagagatagacctacttcttgttagccactttcac
ttagatcactgtggaggtctgccgtattttctaaagaacactcagtttcgtggacgagtt
tttatgacccatgcaagcaaagctatttacagatggaatctctcggattatgtcaaagtc
agtaacctgtcagcagagcgtatgctgtacaccgacgcagacctccagacgagcatggac
cggatcgaaacagttaatttccaccaggaagtcgatctaaatgggatacgtttctcatgt
ttccatgccggtcatgtcctgggggcctgtatgttcctgatagagattgctggtgtcaag
atactgtatacaggtgatttctcacgccaagaggaccggcatctgatgcaggccgagttg
cccaatatcaaaccagatattctcattacagaatccacctacggcactcacatacatgag
aaacgggaagaccgagaggcccgattcacaagcacggttcacgacatagtcaacagagga
gggcgctgtttaatacccgtctttgccctggggcgagcacaggagcttcttctgattctt
gatgagtattggtcaaatcaccctgagctgcatgatataccaatctactatgcctcatct
ctggctaagaagtgcatggccgtctaccaaacatatatagatgctatgaatgagaagata
cgaagacagatcaatgttagcaatccatttgtattcaagcacatttcaaacctacgtggg
atggaccactttgatgacgtcgggccgtctgttgtcatggcgagccctggtatgatgcag
tctggcctgtcgagggagctgttcgagaactggtgcacggaccggcgtaacggtctcatt
atcgctggttacagtgtggaaggcactatggcaaagcatgtgatgtcatcgcccgaggag
atccagactcttagcggtcagaaggttccactgaagatgtccgttgactacatctcattc
tctgctcacgctgattatgaacagacatcagagttcatcagagctcttaaacctcctcag
attgttttggtccatggtgaagcgaatgaaatgagtagattgaaagctgcgattctgagg
gaatacgaggacgacgacgagtataacatccaggttcataaccctcgcactacccaagct
gttgagctctacttcaggggagagaaaatggcaaaggtgatgggtagcctcgcagctcag
cgcccaaggcacaatagcaagatatcggggatccttgtcaagagaaactttaactatcac
atcatggccccatcagacttatcagaatacacggatctagctgttagcaatgttacccaa
cgccagagcatcgcctaccatgccccgctctctcttctcacgcactacctcacccagttg
tcgaccgacctggaatatacggagctcaacgacaagcccgctctccgtatcttcggtgaa
atcaacattgtccatgacccagctgccaggattataacattagagtgggtagccaatgct
gagaatgacatgtacgctgatgctgtcatgacggtcgtagtgagggttgcttccgatcca
gacgctcaaaaattcaagcagttaccagccaaaaacgatagccaggtattcagcgaacgt
ctcatggtcctactgagggatatgttcggccagagtactgttacaaacttccctgacagt
gatgatctgctggtctgtatggacggcaaagaagcacaagtcaacatcgaatcactggag
gtgaagtctgaggataagcaactgaagtccatggtcacaactgctatgaaaagattgcat
gaagcgattgaccctgttgctatcgtcagctag
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