Lytechinus variegatus (green sea urchin): 121417481
Help
Entry
121417481 CDS
T11173
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121417481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121417481
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
121417481
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
121417481
NCBI-ProteinID:
XP_041467167
LinkDB
All DBs
Position
1:7269384..7300439
Genome browser
AA seq
844 aa
AA seq
DB search
MLTSRSFVKKTRKGGVMKVVREHYLRDDIWCGSAACSKCPMDKTVLEKEPVPEVENTLCR
YPHYLLLDTNVVLHQVDILEDKAIKNVILLQTVQKEVKHRSLPSYKRIRDLIANDKKKFY
VFTNEHHRETYIEIEPKESPNDFNDRAIRKSLTWYDNHFKDTEIKIVLLTNDVDNRDKAR
KEGCRAFTVNEYVKAMEGRPELMDRLAQIETKERQRKANDSDITAPGGKNVLYPEHLSSC
EINAGIKEGRYKKGTFKASRENFREGYVSVQGMEKMVFIKGLANQNRAVQGDIVAVEILP
ESQWTAPSTVIAEDKGSKEDVLDEDTDNSISSPKKGAIPTCRVVGIIQRNWRPFCGVIMP
PAVQGGTRHLFMAAERLIPKIRIETQQYETLKGNRIIVSIDSWPRDSRYPLGHFVRNLGA
IGDKETENEVLLLEHDVPHLPFSEAVLSFLPKLPWTITKEDEAAREDLRHIDICSVDPPG
CTDIDDALHYRPLENGNAEVGVHIADVSHFIKPGNALDTEACNRGTTVYLVDRRIDMVPD
LLSSNLCSLRGGEVRFAFSTLWEMTPQAEIVNVRFTKSIIKSRAAFTYEEAQNKIDDKSQ
NDALAIGLRGLNRMAKILKQKRIDNGALTLASSEIRFSMDSETHDPIEVERKVMRETNSM
VEEFMLLANISVAQRIRQEFPQSACLRRHPVPPPSNFEPIIKVALTRGFELQVDSGKALA
DSLDKANIPSIPFFNQLLRMMTTRCMTQALYFSSGMLQEDEYLHFGLASPIYTHFTSPIR
RYSDVIVHRMLAVAVAADSCYPDLLDKTKIQEICDNLNYRHRMAQYAGRASVDLHTQVGT
YCVV
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgttgacttccaggagttttgtgaagaagactcggaaaggaggagtgatgaaggttgtg
agggagcactatctgagggacgatatttggtgtggatccgctgcttgttccaaatgcccg
atggacaagacggtcttggagaaggagccagtgcccgaagtggaaaacacgttgtgccgc
tatcctcattatctccttcttgatacaaatgtagttttgcatcaggtggatatactggag
gacaaagcaattaaaaatgtcattctcctgcagacagtccagaaggaggtcaaacacaga
agtttgccatcgtacaaaaggatacgagatctcattgcaaatgacaaaaagaagttctat
gtattcacaaatgaacatcacagagagacatatattgagatagaaccgaaggaatctcct
aatgatttcaatgatagagcaatacggaagagccttacttggtatgataatcacttcaaa
gacactgagatcaagattgtcctgctcaccaatgatgttgataatagagataaagcaagg
aaagagggttgtagggcattcacagtcaatgaatatgtgaaggcaatggaaggcagacct
gagctgatggacagactggctcagattgaaaccaaggaaagacaacgcaaggctaatgat
agtgacatcacagcaccaggaggcaagaacgttctctatccagagcaccttagctcttgt
gaaatcaatgctggtatcaaggaagggagatacaagaaagggacattcaaagcaagcaga
gaaaactttagggagggatacgtcagtgtacaaggaatggagaaaatggttttcatcaaa
ggactggccaatcagaacagagctgtgcagggtgatattgtagcagtagaaattcttcca
gagtctcaatggacagcgccctctactgttattgcagaagacaagggatcaaaagaagat
gtactagatgaggatactgacaactcaatcagcagtcctaagaagggagcaatacctaca
tgtcgcgttgttggtatcatccagcgtaattggcggccattttgtggtgttattatgcct
cctgcagtccaagggggcaccagacatctcttcatggcagctgaacggcttataccaaag
atccgtattgagacacagcagtatgagacattgaagggtaataggatcatagtcagtata
gactcgtggccaagagattctaggtatcctctaggtcattttgttcgtaaccttggtgca
attggagacaaagaaacagaaaatgaggtgttgttattggagcatgacgtaccccatctt
cctttctctgaagcagtgctaagtttcttgccaaaactgccatggacaatcacaaaagag
gatgaagcagcaagagaagatctgaggcatatagacatctgcagtgtagatcctccaggg
tgtacagacattgatgatgctcttcattatagaccattggaaaatggcaatgcagaggtg
ggtgttcacatagctgatgtcagtcacttcattaagccaggaaatgccttagacacagag
gcctgtaacagaggtacaacagtttatcttgttgacaggaggatagacatggtaccagat
cttcttagttctaacctctgttctctaaggggtggtgaggtaaggtttgccttctcaaca
ctctgggagatgacccctcaagccgagattgtcaatgttagattcacaaagagcatcatc
aagtcaagggcagcattcacgtatgaagaagcgcagaacaagattgatgataaatcccag
aatgatgctctagcaataggtctaagaggactcaacaggatggccaagatactcaagcaa
aagagaattgataatggagctctgacgttagcatcatctgagatccgattcagtatggac
agtgagactcatgatcctattgaagttgagaggaaagtcatgagagaaaccaactccatg
gttgaagagttcatgttgttggctaacatctctgtagcccagaggataagacaggagttc
cctcagagtgcttgccttagaagacatcctgttcctccaccttcaaacttcgaaccaatc
atcaaggttgctctcacaaggggctttgaattgcaggttgacagtggtaaagcactcgct
gattccctagataaggccaatattccttccattccattcttcaaccagttattacgtatg
atgacaacgcgatgtatgacacaagccctctacttcagcagtgggatgctacaggaagat
gaatacctacattttggtttggcctcaccaatctacactcattttacatctcccatcaga
agatactctgacgtgattgtccatcggatgttagctgttgcagtcgcagctgattcctgc
tacccagatctcttggacaagaccaagattcaggagatctgtgacaatttgaattatcgt
cataggatggcacagtatgcaggtagagcatcagtggatttacatactcaggtaggaact
tactgtgtggtgtga
DBGET
integrated database retrieval system
