Lytechinus variegatus (green sea urchin): 121418065
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Entry
121418065 CDS
T11173
Name
(RefSeq) splicing factor 1-like isoform X1
KO
K13095
splicing factor 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121418065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121418065
Spliceosome [BR:
lvg03041
]
Complex A
Other components
Complex A specific factors
121418065
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
zf-CCHC
KH_1
KH_12
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
121418065
NCBI-ProteinID:
XP_041467707
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All DBs
Position
1:complement(57756241..57784587)
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AA seq
844 aa
AA seq
DB search
MAGTGANSVPLGALHPVFSGGGKSSGNDSMLNAAREAAARVTANILKRDHAGIAARPAQA
QSTATGGPVSAAHHPLTMPGQRQIIEPLMQASSSWPMQQQPETSKRRKRSRWGGEDVKAA
PGVATVIPSGLSKEQETQVLLHLQIEELSRKLRTGELGVPPNVEDRSPSPEPIYNHEGKR
LNTRDYRMRKKLEEDRHKMIQEALSLNPEYKPPADYKPPVQRVSDRVMIPQDQHPEINFV
GLLIGPRGNTLKKLEKDTTTKIMIRGKGSVKEGKVGRKDGQPLPGEDEPLHALVTANNAE
SVKKAVIQIQEIIKQGIETPEGQNDLRRMQLRELARLNGTLRDEDMLRCSNCGSTEHRTW
QCTEKQNITNNILCSLCGSAGHIAADCREKAIGDRPLAQPIVNSADKAKMDSEYLSLMAE
LGEGPLPGGGGGGPPPPPKVSLGGPPSGPRHPTPPISSAPPNRPLMMPPGGGQGNNQDHP
PPLMGQNLNLPWNNRSQNKPPSLLNSGPAQRPPLGQGPPPPPLPHQGPPPPSSSGPPPHH
NQPPFMGPPRPPLMNRPPPVGPPGGMPPNMMPSHMGQGPPGPPPGGFNPMMPPPPRGRSQ
LPPWAFHGGPPSSGSPNSSAPAPAPVPPPSLLVAPPPPPPSSEPPPQPPTSAPWQISSSS
QGVGTSPPSQPPWQSQAILQQALALSQPQQAATATATTTETTTSTTKPSPPVPWQQLAAA
AAAANAPPVSSASSSSPALPPWLQAYTAAAAAAAAAAGGGGVSTSTAGQPTPPQWAQAMP
PPPPQPVPPPSLPGMPPMGVPPPHMQPPMPPLPFQQGGMSDVAPPPAVPPPHLNAPPPPP
PPSS
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaacaggtgcaaacagtgttcctctgggagctttgcatccagtcttcagtgga
ggaggaaaatcatctggaaatgactcgatgttgaacgctgcccgcgaagcagctgcgagg
gtgactgcgaacatcttgaaacgggatcacgccgggattgccgcccgaccagcgcaggcc
cagagtaccgctaccggtgggcctgtgtcggccgctcatcacccattaacaatgcccggt
cagcgccaaatcattgaacctctgatgcaagcatcttcaagttggccaatgcagcagcaa
ccagagacttctaagcgtcgcaaacggagtcgatggggtggagaggatgtcaaggctgca
ccaggtgtggctaccgttatcccttcaggtctgtcaaaggaacaagaaactcaagtctta
ttacatctgcagattgaagaattgagccgtaaactacgaaccggagagcttggtgtgccg
cccaatgtggaggataggtcaccttcacctgagcctatctataaccatgagggcaagcgt
ctcaacaccagggactatcggatgcgcaagaagttagaggaggatcgtcacaagatgatc
caggaagcactctctttgaatccagagtacaaacctcctgcagattacaagccacctgtc
cagcgagtgagtgatcgggtcatgataccccaggatcagcatccagaaattaactttgtt
ggcttactcatcggacctcgaggtaacaccttgaagaaacttgagaaagatacgaccacc
aagatcatgatccgcggcaagggatcagtgaaagagggcaaggttgggcgtaaagatggc
cagcctttaccaggagaagatgaacctctccatgcccttgtcacagccaacaatgctgag
agtgtcaagaaggcagtcattcagattcaagagatcataaaacaaggtattgaaacaccc
gagggtcaaaatgatctcagaaggatgcagttgagagagcttgcccggctgaatggtaca
ctcagggatgaagatatgctcaggtgctccaactgtgggtccacagagcatcgtacctgg
cagtgtacagagaagcagaatatcaccaacaacatcttatgctctctctgtggctcagcc
ggtcacatagctgcagattgcagggagaaggccatcggagaccgcccccttgcccaacct
atcgtcaactcagcggacaaggctaagatggactcggagtacctttctctcatggctgag
cttggtgaaggtcctttgccaggtggtggaggaggaggaccaccaccaccaccaaaggtc
agtttgggcgggcctcctagtggtcctagacaccccacaccccctatctcatcggctcca
cccaatcgccctttgatgatgcccccaggtggtggacagggcaacaaccaggatcaccct
ccccctctgatgggtcagaacctgaacttaccttggaacaaccgcagtcagaacaagcca
ccatccctgcttaactctggccctgcacagcggcctcctctgggccagggcccccctcct
cctcctctcccccatcaaggccctccaccgccctctagcagcggacctccaccccatcac
aaccagcccccgttcatgggtccaccccgacccccactgatgaatagaccccctccagtt
ggacctcctggtggcatgcctccgaatatgatgccttctcatatgggccaaggaccccct
ggaccccctcctggtggattcaacccaatgatgccccctccacctcgtggaagatctcag
ctgcccccgtgggcatttcacggtggacctccatcttctggttcccctaattcatcagca
ccagctccagcgccggttcctcccccatcccttctagttgccccaccccctcccccaccc
agcagcgagccgcctccacaaccccccactagtgctccatggcagatttcgtcatcaagc
caaggggtagggacgtctcccccatctcagcctccatggcagtcccaggccatcctacag
caggccctagccctctcgcagcctcagcaggcagcgacagctactgctacaacaactgag
actactacatccacaaccaagccatctcctccagtaccatggcaacagcttgctgcagct
gcagctgcagccaatgctcctccagtcagttcagctagcagctcatcaccagccctgcca
ccctggctacaagcctatacagcagctgctgcagcagcggcagctgcagctggcggagga
ggagtctctacaagtacggcaggccaacctacacctccacagtgggcgcaagcaatgcct
ccaccaccaccccaaccggtcccccctccctctttgccaggaatgccccctatgggggtg
ccacctccccacatgcagcccccgatgccccccttgccattccagcaaggtggtatgtct
gatgttgcaccaccccctgcagtaccccctcctcacctgaatgcccctcccccacccccg
cctccttcaagttga
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