Lytechinus variegatus (green sea urchin): 121418218
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Entry
121418218 CDS
T11173
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin A-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04120
Ubiquitin mediated proteolysis
lvg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121418218
04120 Ubiquitin mediated proteolysis
121418218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lvg04121
]
121418218
Enzymes [BR:
lvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121418218
Ubiquitin system [BR:
lvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121418218
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_16
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_2
zf-C3HC4_3
zf-RING-like
zf-RING_11
zf_RING_Vps8_fungal
AF_1253
zf-RING_5
zf-RING_Vps41
FANCL_C
PHD_NSD
zf-HC5HC2H
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
121418218
NCBI-ProteinID:
XP_041467889
LinkDB
All DBs
Position
7:complement(2875646..2925677)
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AA seq
665 aa
AA seq
DB search
MRGIMLTVTSFALTAAVLGNAYVQKKQFYPSVVYITKSNPSLAVLYLQAFVLVILMGKLF
KKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFGPRFVAMFTLLLFIKCFHWLAE
DRVDYMERSPVISWVFHMRVITLLVVLGCFDLVFINCAYHSTLTKGASVQLVFGFEYAIL
LTVLINVFFKYVLHTIDLQSENPWENKAVYMLYTDLIMGFIKVFLYTAFVAIMIKIHTFP
LFATRPMYLAMRSFKKAVHDVIMSRRAIRNMNTLYPDATAEDLANTDSICIICREDMVAA
EPGAPAGGAGSCKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRLSVVAASQRLRQGQQ
QQQGVGQQGQAGVGQQGNGQVPPVPGQGMPPFPPGFQFWLPQYQGGVPPFPQPPVPPQPS
SSSSSTTQPGTSTSTPSTAASQATSPGTPSSAGASAGTPTSLGTSLPNFPPPPSMGAPGM
GMFPPMMPPFMMPFGMSPPMPPPNFSGLSDEELRAMEGMERQHVQARIECLQNIQALLDA
AVIQMQQYSTIVSGSGVPTVPVTPASTNTTSATSTVPTPTVQTEASAAPPTTPSEPETLT
STAAPKASESSNDLSALEGAVGFTSPVKDIKDEEAEPVPESPEEQERNEVRRRRLQRLSS
NTSTS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaggggaattatgctaacagttaccagcttcgcgcttacagctgctgtccttggaaat
gcatatgttcagaagaagcaattttatccatccgtagtgtatattaccaagtcaaatcca
agtttagcggtgctgtacctacaagcattcgttctggttatactcatggggaaactcttc
aagaaagtgttctttggccagctcagagctgctgagatggagcatctaatagaaagatca
tggtacgctgtgacagaaacctgcctggcattcaccgtgttcagggatgacttcggtcct
cggttcgtggccatgttcacactgcttctcttcatcaaatgtttccattggctggcagag
gatagagtcgattatatggagaggagtccagtcatctcctgggtgttccatatgagagtt
attacccttcttgtggtccttggctgctttgacttggtgtttatcaactgtgcgtatcat
agtactttaaccaagggagcttccgttcaacttgtcttcgggtttgagtatgcgatctta
ttgactgtgttaatcaatgtgttcttcaagtatgtattgcacaccattgatcttcagagt
gagaatccgtgggaaaacaaagctgtgtacatgctttacactgacctcattatgggtttt
atcaaagtgtttctttacacagcgtttgtggccatcatgatcaagattcatacattccct
ctgtttgccaccaggcctatgtacttagccatgaggtctttcaagaaagctgtacatgat
gtcattatgtctagaagagccatccgtaatatgaacacactgtaccccgatgccaccgcc
gaagaccttgccaacaccgatagcatctgcatcatctgccgagaggacatggtggcagcg
gagccgggcgcaccggcaggaggcgccggaagctgcaagaagcttccttgcaaccacatc
ttccacagcagctgcctccggtcgtggttccaacgtcagcagacctgccccacctgcaga
atggacgttctcaggctttccgtggtggctgcgagccagaggctcaggcaggggcagcag
cagcaacagggggtggggcagcagggacaggcgggggtgggacaacaaggcaatggacaa
gtgccacctgtaccagggcaaggtatgcccccttttccaccaggcttccagttttggctt
cctcaatatcaaggaggagtgcccccctttcctcagccccctgtaccccctcaaccatcg
tcatcatcatcctcaactactcaaccaggtacttcaacatctacaccatccactgcggct
tcacaagccacatcacctggaacgccatcatcagcaggtgcaagtgcaggcacgcccaca
tccttgggtacttctctaccaaacttccctcctcctccaagcatgggtgctcctggtatg
ggtatgttccccccgatgatgcctccattcatgatgccatttggcatgtcacctccaatg
cccccacccaacttcagcggtctgtctgatgaagagcttcgggccatggaaggcatggag
agacagcacgtccaagccaggattgaatgcctccagaacatccaggctctcctcgatgcc
gccgtcattcagatgcaacagtacagtaccatcgtgtcgggatcaggtgtacctaccgtt
cctgtcacgccagcctccaccaacacaacgtcagccacctccacggtccccacccctaca
gtgcagacggaggcatcagccgccccgcccaccacacccagtgaaccagagacattaaca
tcgacagctgctcccaaggccagcgagtcaagcaatgatttatcagccttagagggcgcc
gttggctttacgtcacccgtcaaggacatcaaggatgaagaagcggaaccggtgccagag
agtcccgaggaacaggaacgcaacgaggttaggaggagacggttacagagactcagtagc
aacacatcaacttcatga
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