Lytechinus variegatus (green sea urchin): 121418560
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Entry
121418560 CDS
T11173
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121418560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121418560
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121418560
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121418560
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121418560
U7-dependent histone pre-mRNA processing factors
121418560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
Cohesin_HEAT
DUF6739
Motif
Other DBs
NCBI-GeneID:
121418560
NCBI-ProteinID:
XP_041468426
LinkDB
All DBs
Position
7:16312280..16340411
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AA seq
1230 aa
AA seq
DB search
MSAGSSRLSVASQFFMEDDGEGQTVSDRVVDLLQQTHTLPRDSQKINNLTQVQQLIIDKD
PSLLDNFLDEVLQFQFDDSIEVRKFVLSFAECACKKDNQILCTVLPRLHMMLTEANQPAA
VIKRVILCTSQLFRVTIKWIAGVKDIREEIEAGWASLMLMKKKIVSELLDDDNDGVRTYA
IKFTEMIATTLSAKSSDSLVPKRAESDITLDQIPDGNSLLIKKKLQHEGTHSLDALLSLL
VSASISSINLMVCMGSLTSIAKQRPDFMPKVIQAFENLHVNLPPTLSKSQVSSVRKSLKI
QLFGLLRHQSSVDLRRNIGTLLTDLGASEVEIIRNTPRVLERPKRSRNEAEGDQSTRKKQ
KVLDDEEEGGEGKKKDEPGPSKRVTKATVIDLLAAEVEPLLRNHENVANLVLLSMVSLPD
TMPATFQATYTPIAAAGTDTQVQHLARMVSNQLAAAGIKPTNYENVEIEEEQEPPEKMEE
EDFTTKGIPVLGGKSEPSKDESKKKAPIVIEPPPTKGVKRPKHFKIREVTHLLSKDDADK
LAHGAVRRIIAAEKAVGHGPAAKTRTKILSALVTQFGGNLSQLLENHILEDLRSRSDIAL
AWLYQEYSNIQGYMPHTHGQDVTTQRYDSLLCNLLKSLLVRTDQRDGLFNRLVMEAPVIT
DDALKVIRQFCEDETHFYAGMHALRELILKKPADLEKYVKELLDLTQHERTEVRSQAIQY
IKRFYDRADLKPLIEEFATSFLRKLLLNRPPAALVLRLADQEMQAVAAKAWTEETTKMCL
YLYLALLPVNHKLIHELANVYVAATADIKRTVLRVLETPVRGVGMSSPELLLLVETCPKG
AETLVTRMMHILTDKTPPSIELVKRVKDLYHKRVSDVRFLIPVLTGLEKKDVISAMPKLI
RLNPIVVKEVFHRLLMSHQAESSGGQSPLTPAELLVALHNIDPSKCDMKSIIKATSLCFS
EKSIYTGEVLAVVMQQLMEQTPLPTLLLRTIIQSLSMYPKLKGFIMNLLLRLINKQVWKT
PKLWEGFVKCCERTIPQSFQVLLQLPPPQLAQVFDMSKDMRVKLLAHVQNFSSHQQAHVP
KAIMKVLETDPVKEREEQERREAEEKRRKEKEEEEERLRQERLEKEKQEALAAVEEQVRK
EEAEKREAEEQERVQQALKAQEKAEEASTDAEETPVGGGTPTKDETDEEKSKEPEEATPV
KAGRGRGRGRGAKAAPTPPAAGVRRSSRRK
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccggaagtagtaggctatctgtagcttcacaattttttatggaagatgatgga
gaaggacaaaccgtatctgatcgggttgttgacttgctgcaacaaacccacactttgccc
agggattctcagaagataaacaacttgacccaagtccagcaacttattattgacaaggat
ccttctctacttgataattttcttgatgaagttcttcagtttcagtttgatgattccata
gaagtaaggaaatttgtactcagctttgcagaatgtgcctgcaagaaagacaatcagatt
ttatgcacagtgttgcctcgtcttcatatgatgctaacagaagcaaaccaacctgctgcg
gtcatcaagagagtcattttatgtacctctcaactgttcagagtaaccatcaaatggata
gccggtgtgaaagatattcgagaggagatcgaggccggctgggcatcgctgatgttgatg
aagaagaaaattgtatcagagctattagatgatgataacgatggagtgcgaacatatgcc
atcaaatttacagaaatgatagccactaccctttctgctaagtcctctgattcattggta
ccaaagagagctgaatccgatattactcttgatcagatcccagatggtaactctctcctt
atcaagaagaagttgcagcatgaaggaacacatagtttggatgctctcttgagtctcctg
gtgtctgctagtatatccagtattaatctgatggtgtgcatgggttcactcacatctatc
gctaaacagaggccagactttatgcccaaagtcatccaagcatttgaaaatctacatgtg
aatctccctccaacgttgtcgaaatctcaagtaagcagtgttcggaaatcgctcaagatt
cagctgtttggtcttctacgtcaccagtcgtcagttgatctcagacgtaacattggtact
ctccttactgatttaggagcttctgaagttgagattatccgcaacacaccaagggtactg
gaaagaccaaagcgatctcgtaatgaagcagaaggtgatcaaagcacaaggaaaaagcaa
aaggttcttgatgatgaagaggagggtggagaagggaagaagaaagacgagccaggacca
agtaagagggtcaccaaagcaaccgtgattgatctcttggcagccgaggttgaaccattg
cttcgtaaccatgaaaacgtagcaaacctggttctacttagtatggtctctttaccagac
acaatgccagccacattccaggctacctacacacccatagcagcagcaggcacagacaca
caggttcaacatttagctaggatggtcagcaatcagctagcagctgctggtatcaaacct
accaattatgaaaatgtggagatagaagaagagcaagaacctcctgagaagatggaagaa
gaagatttcaccaccaaaggaattccagtccttggaggcaaaagtgaaccatctaaggat
gaatcaaagaagaaagctcccattgtgatagagccgccgcctaccaagggggtgaaacga
cccaaacatttcaaaattcgcgaggttacgcatctcctgtccaaggatgatgcagataaa
ctggcccatggagctgtcaggaggatcatagctgcagaaaaagctgtaggccatggtcca
gccgcaaaaacaagaacaaagattctatctgcacttgtcacacagtttggcggtaacctg
tctcaattgcttgagaatcacatcttagaggaccttcgtagccgcagtgatattgctttg
gcctggctctatcaggaatattccaacatccaaggttacatgccacacacccacggtcag
gacgtaacaacacagagatatgatagtcttctctgtaacctcctgaagagtttacttgtc
aggacagatcaaagagatgggttgttcaacagacttgtcatggaggcaccagtcatcaca
gatgatgctcttaaagtcattagacagttttgtgaagatgagactcatttttatgctggt
atgcacgccctacgagagcttattctaaagaaaccggcagacttggagaagtatgtgaag
gagctgcttgacttgacccaacatgagagaactgaagtcaggtcacaggccatccagtac
atcaagagattctatgacagagctgatcttaaaccacttatagaggagtttgctacatcg
ttcctgcgtaagctgctgttgaacagaccaccagcagcccttgtcttgcgtctagctgat
caggagatgcaagccgttgctgcgaaagcctggactgaagagactactaagatgtgtctt
tatctctacctcgctcttcttcccgttaatcacaaactcattcatgaactagctaatgta
tatgtagctgccacagccgatatcaagagaactgtacttagggtcttagaaacaccggta
cgaggtgtaggtatgtcttctccagagctactccttttagtagagacctgtcctaaagga
gctgagacactcgtaacaagaatgatgcatattctgacagataaaactccaccatctatt
gaacttgtaaagcgagtgaaggatttgtatcacaagagagtatcagatgtgaggttccta
atcccagtgttaactgggcttgaaaagaaagacgtaatatctgccatgcccaagttgatc
cgtctgaaccccatcgtagtgaaggaggtatttcatcgacttctcatgagtcatcaagca
gagagtagtgggggtcaaagccctttgaccccagccgagcttcttgttgctcttcataac
attgatccttcaaagtgtgatatgaaatctatcatcaaagcgaccagcctgtgtttcagt
gagaaatcaatctacacaggagaggtgttagcggtggtgatgcagcagctgatggaacaa
acccctctaccaaccttgcttctccgtaccatcatccaatctctgtccatgtatcccaaa
ctcaaagggttcatcatgaacctcttactaagactcatcaacaaacaagtgtggaagaca
cccaaactctgggagggattcgtcaagtgctgtgagcgaacgatacctcagtctttccaa
gtacttctacagcttcccccacctcagctggctcaagtatttgatatgagcaaggacatg
agagtcaagctcttggctcatgtacaaaacttctcttcccatcagcaagcccatgttcct
aaggcgatcatgaaagtgctcgaaaccgatccagtgaaagagagagaggaacaggagagg
agagaggcagaagagaagagacggaaggagaaggaggaagaggaggagagactaaggcaa
gaaaggttagagaaggaaaaacaagaggccctggctgcagtagaagagcaggtgaggaag
gaggaagctgagaaacgggaagcggaagaacaagagagagtgcaacaagctctcaaggcc
caagagaaggccgaagaagcaagcacagatgcggaagaaacgcctgttggtgggggtaca
ccaaccaaagatgaaacagacgaagagaaatccaaggagccagaagaggctacgccagta
aaagcaggtagaggaagaggacgagggaggggcgctaaggcagcgccaactccacctgct
gccggtgtacgtcgtagctcaaggaggaagtag
DBGET
integrated database retrieval system
