Lytechinus variegatus (green sea urchin): 121418593
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Entry
121418593 CDS
T11173
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04137
Mitophagy - animal
lvg04140
Autophagy - animal
lvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121418593
04137 Mitophagy - animal
121418593
04148 Efferocytosis
121418593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lvg03000
]
121418593
Transcription factors [BR:
lvg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121418593
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1a_CTAD
PAS_9
PAS_4
HIF-1
Motif
Other DBs
NCBI-GeneID:
121418593
NCBI-ProteinID:
XP_041468476
LinkDB
All DBs
Position
7:complement(17057708..17114377)
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AA seq
930 aa
AA seq
DB search
MATVHREKRRNSEKRKEKSRNAARSRRGKETEIFYELAHTLPLPHNACAQLDKAGIMRLI
LSYLKIGKVLPKEIKVEEREESKSMAIEQIVDSHYQKALDGFLLVLSQEGDMIYISENVS
KHIGINQVDLMGQSIYDYAHPCDHDEIREQLSDRPGLTLTTLPSVTSKRKHHSFLMRVKC
TLTPKGKIVNLKAASYKAVHCQGHMKLALSDTSVLGYRMPPSPCLVLIASPIPHPSNIEV
PLDCSAFLTRHSMDMKFTYCDERIEQLMGYIPTELVGQSFYVYYHALDGQLIDKSYKDLY
AKGQTSTGRYRFLAKNGGYMWLETQATIIYNNKTNKPQCIVCVNYAISGVEHGDRVLSVS
QQEKEKEEEVIKDVEMKEEKTFAAPQHANISNDFPLYLAGCNSSQAVEEKLAYLAPTAGD
VMIELDPSEGQRMDMNSEITEFNESDSFVPFDPFAPLPPSQANDSVQQNTNETVMNVQDP
GVLKTQYLCTNNDPLLLDKRPNLDTEKQPVNDVVAKQQIPCDELAMRAPYIPMGEDFDLS
TDSLLGDMDPFTSETWMPVDPFGTGSIDKNLRPMEDNGMDYPASQSSSCRTSGSPMESCN
SSLSGSVPNLYFPNSSPSTPQHTPLLLSPAMSPHSGAPTPMLHSPMNPNLLSPLGQPSHQ
DDRLFASPLPSPAPIQQPLGVYIPYPPMSSYQQVPPSPQNIMSPPHQRCQTSIQSPPLKR
KQEHPDCGDCAPRSKISRSDGLLGMLGMRNCRGGGADDDRVMYVKREPDSEPDRSSPGES
PYIDTGTVRGGGGQQPKPRDNNMDLLSALLTKVDKDNVNPFRHSQLLQIVAQRVSGNGSS
KGPNALLHASTSNLPSSIKPKNQPEQEPKHQGQPVRKSSITQLLGRDGLPLGAALPLITN
LDAEVNAPLPTNRLLQGEDLLQALDLTAPY
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgttcacagagaaaaacgaagaaactctgagaaaaggaaagagaaatcaaga
aatgcagctcggtcacgaagagggaaagagactgaaatattttacgagttggcccacact
ctacctcttccacacaatgcctgtgctcagctagataaagcgggtatcatgaggcttata
ctcagctatctcaagattggaaaagtgcttcccaaagaaatcaaggtggaggagagagaa
gaaagtaaatccatggcgatagaacagattgttgattctcactaccagaaggctctagat
ggatttttattagtcttatcacaagaaggcgatatgatctatatttcagaaaatgtctca
aaacacatcggcatcaatcaggtggacctaatgggccagagcatctatgactacgctcac
ccatgcgaccacgatgagatccgagaacagttgtctgaccggccaggcctgacgctgacc
accctcccctcagtaacgtccaagcgtaaacatcacagtttccttatgagggtcaagtgt
acactaacacccaagggaaagatagtcaaccttaaagcagcctcatataaggcagtacat
tgtcaaggtcacatgaaactggccctgtctgatacatcggtactgggctataggatgccc
ccttccccctgccttgtactcattgctagccccataccacacccctccaacattgaggta
cccctggactgcagtgcgtttcttacaagacacagtatggacatgaagtttacctactgt
gatgaaaggatcgagcaactgatgggctacatacccactgaactggttggccaatcattc
tatgtctactaccatgcactggatggtcaactcattgataagagctataaagacctgtat
gctaagggtcagacatcaactggcagatatagattcttggcaaagaacggtggttacatg
tggctcgaaacacaagctactatcatctataataacaagaccaacaaaccacagtgcatt
gtgtgtgtcaactatgccatcagtggtgtagagcatggagacagagtcctctcagtcagt
caacaagagaaggagaaggaagaagaggtgatcaaagatgttgagatgaaagaagaaaag
accttcgctgctcctcagcatgccaacatttccaatgacttccctctctatctggctgga
tgtaactcgtctcaagcggtggaggagaaattggcttacttagcgccaactgctggtgat
gtcatgattgaattggatccttcagaaggtcagaggatggacatgaatagtgagatcaca
gaattcaatgaatcagatagcttcgtgccctttgacccctttgcacctctaccgcccagc
caagccaatgatagtgtacagcagaacaccaacgagactgtcatgaatgtacaggaccct
ggtgtattgaagactcagtacctgtgtaccaacaatgatccattgctacttgacaaaaga
ccaaacctggatacagagaagcaacctgtcaatgatgtggttgctaagcaacagattcca
tgtgatgagctagctatgagggctccttacattcctatgggtgaggactttgacctgtca
actgattctcttcttggtgatatggatcccttcacgagtgagacttggatgcctgtagat
ccattcggtacaggttcaattgataagaacctaagaccaatggaagataatgggatggac
tacccagcctctcagagtagcagctgtcgtacatcaggcagccccatggagtcctgtaac
agcagtctgagcggcagtgtacccaatctttacttccccaattcctcacccagcactcct
cagcataccccgctcctgctctccccggccatgtcgccccacagcggtgcccccacaccg
atgctgcactcgccgatgaatccaaaccttctgtctccacttggccaaccatctcatcaa
gacgacagactcttcgcctcaccgcttccgtctcctgcacccatccagcagccgttgggt
gtgtacatcccgtacccacctatgtcgtcgtaccagcaggtgcctcccagccctcagaac
atcatgtcaccccctcatcagagatgccaaacaagcatacaatccccgcccctcaagcgg
aagcaggagcatccagattgcggagactgcgctcctagaagcaagataagtagatctgac
gggctgttagggatgcttgggatgaggaattgtagaggaggaggagcggatgacgacagg
gtcatgtatgtcaagagagaaccagattcagaacctgacagatcatccccaggtgagagt
ccttacatagacacaggcacagtaagaggagggggtggacaacagccgaaaccaagagat
aataacatggacctactatcagcactccttactaaagttgataaagacaatgtcaatcca
ttcagacattcacagctactacaaatagttgctcagagggtctctgggaatggctcttct
aaaggccctaatgctctactgcatgccagcacatccaacctgccatcatcaatcaagccc
aagaaccaaccagagcaagagcctaagcatcagggccagcctgtgaggaagagcagtatc
acccagctgttaggcagagatggactgccactaggagcagctttgccactcatcacaaac
ctggatgcagaagtcaatgctccattgcctaccaacaggctgctacagggggaagacctc
ttgcaagccctggacctaacagccccgtactga
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