Lytechinus variegatus (green sea urchin): 121418775
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Entry
121418775 CDS
T11173
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04140
Autophagy - animal
lvg04142
Lysosome biogenesis
lvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
121418775
04140 Autophagy - animal
121418775
04148 Efferocytosis
121418775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lvg04131
]
121418775
Membrane trafficking [BR:
lvg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121418775
Hops complex
121418775
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
VPS18_solenoid_2nd
Clathrin
TPR_Vps41
zf-C3HC4_2
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_VPS8
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3H2C3
Beta-prop_EML_2
WD40_CDC20-Fz
TPR_11
Beta-prop_NOL10_N
zf_RING_Vps8_fungal
Beta-prop_THOC3
zf-RING_5
Beta-prop_HPS5
zf-ANAPC11
Beta-prop_IFT140_1st
TPR_Vps8
Beta-prop_WDR3_2nd
WD40_Prp19
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
121418775
NCBI-ProteinID:
XP_041468812
LinkDB
All DBs
Position
1:complement(61155209..61182896)
Genome browser
AA seq
1159 aa
AA seq
DB search
MAFLQWRRFNFFDKDVVKYPDSTEIFAKLKDIDITACASGRGQVTLGDSEGNLLFLDRNL
DLDGFKAYELRVTHIHQLKQHNIIFTIGQDEAGINPVIKVWNLDKRDKSNNPSCSRITRA
LPGSNATANVTAIAVSENLNMMAIGFQDGTVTLFKGDVTRDRHSKSPKVVHKGRTQVTGL
AFRHTQRSNVLFVSTEDAVIACHIGTKDVRTETLDHHGCSSHCAVMSDATQDHQFVIGRN
DAVYFYQPDGRGPCLAFEGRKTILHWFRGYLVVVTKDSKTIPRQIAGEGLARMMDTVTVY
DIQNKFIAYSAPVPEVLDIIQEWGSLYVLGGDRKLYQLQEKDTQTKLEMLFKKNLYVMAI
NLARSQHYDYDGLIDIFTQYGDHLYSKGDHDGAIAQYKKTIGRLEPSYVIRKFLDAQRIH
NLTAYLQELHKQSIANEDHTTLLLNCYTKLKDTNKLDEFIMTKDKDVDFDVETAMKVCRQ
AGYFKHALFLAEKHKQHDWYLKVQLEDIKDYQKALNYISTLEFYEAMDNIKKYGKILMTE
VPKEATDFLKVLCTDYKPADRPLVDPSTLSGGMPPPIQRASVEEFIHIFVNNSAQLMEFL
EHMIKVQTESSSQIYNTLLELYLHDMAHETEKRPRLELEKKAMALLQTGETRYDIDQALV
LCQMHSFQKGILYLYEKAQLYQQILHFYMEHDSYDKIIQTCKSYGNKDPNLWVQALSYFA
AKEENCKPFIVEVLSQIDRRNLLPPLLVIQTLAHNSTATLSVIKDYIVRRLQQENDQIAD
DERLIKQYREETKKMKSQIEEMKTSAKMFQVSKCSVCNHPLELPSVHFLCQHSYHQHCFE
SYAENEQECPACLPENRKVLDIIKAQEQSKDLHEQFHRQLEKSQDGFSVVADYFGRGVFN
KVTLLTDSFSPAKTTTSNQRSQPSQPARPPAQQAQPIRSAATQARPTPSAISSAPRPQGG
IPTQQPAKTQVSRPPTSSTPSSRQQAPPQRPATPPTKRTPPAFQQAPPTRSTPPPTQAMA
SKPIRPADPPKRVQTPPQQSQTRSTPPAKEYNPFDEPDEPSISTSQQGRSTALPAAMMRR
GQASGKGSGQSSPAEYNPFTNPDGQLSRGSPSSTGGQQAAPRRAPTPPNPFEEEPSSTGK
NPFEDDMIDDEDKNNPFFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggcctttttacagtggaggaggtttaatttctttgacaaggatgttgtgaagtaccct
gacagcacagagatctttgcaaagctgaaggacattgacatcacggcatgtgcaagtggg
cgtggccaggttaccctgggtgactcggaaggcaacctgctgttcttggaccggaacttg
gatctggatggttttaaggcttatgaactgagagtgacccatatccaccaactcaagcaa
cataatatcatcttcactatagggcaagatgaagctgggatcaaccctgtcattaaagtc
tggaatctagacaagcgtgataagtccaacaacccatcatgtagcaggataactcgagct
ttgcctggcagtaatgcaacggccaacgtgacggcaatagcagtcagcgagaatctgaac
atgatggccattggctttcaagatgggactgtgacactcttcaagggtgatgtgaccagg
gatagacacagcaagtcgccaaaggttgttcataagggtcgtacacaggtgaccggtttg
gctttcaggcacactcaacgcagtaacgttctcttcgtctcaacggaagatgccgtcatt
gcgtgtcacattggcaccaaagatgttcgtacagaaactttggatcaccatggttgttca
tctcactgtgctgtcatgagcgatgcaactcaagaccatcagtttgttattggcagaaat
gatgccgtgtacttctatcagcccgatgggcgtggcccatgccttgcctttgaggggcgt
aaaaccatactccattggttcaggggatatctggtggtggtaacaaaggatagtaagaca
ataccaagacagattgctggagagggccttgcaaggatgatggacacggtgactgtctat
gacatccagaataagttcatagcatattctgctccagtcccggaagtactggacattatc
caagagtggggctccctctatgtccttggaggagacaggaaactgtatcaactccaagag
aaagacactcaaactaaactggagatgctgtttaagaagaacctgtatgtcatggccatc
aatcttgccaggagtcagcattatgactatgatggattgatcgatatatttacccaatat
ggagatcatttgtacagcaagggagaccatgatggggccatagcacagtacaagaagacc
atcggtagattggaaccttcgtatgtcattaggaagttccttgatgcccagcggatacac
aacctgacggcctatcttcaagagctccacaagcaatccatagcgaatgaagatcacaca
actctcctgctcaattgctataccaaactcaaagataccaataagcttgatgaattcatc
atgacaaaggacaaagatgttgactttgatgtggaaacagctatgaaggtatgcaggcag
gccgggtacttcaagcacgcccttttcttggccgagaagcacaagcagcatgactggtat
ctcaaggtacaactagaagacatcaaggattaccagaaggcactgaactacatcagcaca
ttagagttctatgaggcaatggataacattaagaagtatggtaagatcctgatgactgag
gtacccaaagaagccactgatttccttaaggtcttgtgcacagactacaaaccagcagac
aggcccctagtggacccctccactctgtcaggggggatgccgcctcctatccagagggcc
tctgttgaggagttcatccatatctttgtcaacaactcagcgcagctcatggaatttcta
gagcatatgatcaaggtccagacagagtcttccagtcagatctacaacactctccttgag
ctctatctccacgacatggcccacgaaacagaaaagcgccctcggttggagctcgagaag
aaggccatggcattgctgcagacaggagaaaccagatacgacatagaccaggctcttgta
ctttgtcagatgcacagtttccagaagggaattctttatctctatgaaaaggctcaactc
tatcaacagatactccatttctacatggaacatgacagctatgataagattattcagacg
tgcaaatcctatgggaacaaagatcccaacctgtgggtacaggccctctcttattttgcc
gccaaggaagagaactgcaagccgttcattgttgaagtcctctcccaaattgaccgaagg
aatctgctgccccctctcttggtcatccagacgcttgcccacaattccacggctacgctg
tcggtcatcaaagattatattgtgagaagactgcagcaggagaacgatcagattgccgat
gacgagagattgatcaaacaatacagagaagagaccaagaagatgaagagccagattgaa
gaaatgaaaacaagtgctaagatgtttcaggtatctaagtgtagtgtgtgcaatcatccg
ttggagttgccctcggttcatttcctctgtcaacattcctaccatcaacattgttttgag
agttatgcagagaatgagcaggagtgtcctgcttgtctgcctgagaatcgcaaagtacta
gacattattaaggctcaagaacagagtaaagaccttcatgaacaattccatcgacagctg
gaaaagtcccaagatggattctcagttgtagcagattatttcggcagaggagttttcaat
aaggtcaccctcctcacagactcctttagtcctgctaagacgacaacctcaaatcaaagg
tcacaaccgagccagccagcaagaccaccagcccagcaagcccagccaatcaggtctgca
gccacgcaagcccgaccaacccctagtgcaatttccagtgcccctagaccacagggaggt
atacctacccaacaaccagccaagacccaggtttccaggcccccgacctcatccacgcca
agctcccgccaacaggctcccccgcagagacccgccacgcccccaacaaaaagaaccccg
cccgctttccaacaggctccaccaacgaggtccacgccacctccaacacaagcaatggca
agcaagcccatcagacctgccgatcccccgaagagggtacaaacccctccccagcagagc
caaacccgcagcaccccgcccgccaaagaatacaacccgtttgacgaacccgatgaaccg
tcgatatctacatcccagcaagggcggagtacagctctccccgctgccatgatgaggcgg
ggccaggccagcggtaaaggttcgggccagtcatcccctgcagagtacaatccatttacc
aatccagatggccaactgagcaggggttcgccatcatccaccggaggacagcaagctgct
ccccgcagggcgcctactcctcctaatccatttgaggaggaacctagctcgactggaaag
aatccatttgaagacgatatgatagatgacgaggataagaataatcctttttttaactga
DBGET
integrated database retrieval system
