Lytechinus variegatus (green sea urchin): 121418990
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Entry
121418990 CDS
T11173
Name
(RefSeq) polyadenylate-binding protein 4-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121418990
09123 Folding, sorting and degradation
03018 RNA degradation
121418990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121418990
03041 Spliceosome [BR:
lvg03041
]
121418990
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121418990
mRNA cycle factors
Stress granule specific factors
121418990
Spliceosome [BR:
lvg03041
]
Complex C
Other components
Complex C specific factors
121418990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RBD_DEAH11
RBD_RDR6
RRM_3
DUF4788
Motif
Other DBs
NCBI-GeneID:
121418990
NCBI-ProteinID:
XP_041469180
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All DBs
Position
1:complement(61893147..61905383)
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AA seq
638 aa
AA seq
DB search
MQAPGQNYPMNSLYVGDLNPDVTEALLFEKFSSTGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDPLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS
AFGHILSCKVVTDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKER
LMQMGDHQKKFTNVFIKNLAEDIDDTKLADFGSQYGPILSAKIMYDDSKSKGFGFISFEN
HEAANDFVNSINGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKN
LDDEIDDERLRKEFSRYGTITSAKVMSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILV
AKPLYVALAQRKEERRAQLASQYMQRVAPQVRVGQASQPVNPVYPMAAYHYAAMPQTQRN
IFPAGQLAQVRHPRWGQQPQQARTATQPNYQTMQGAAGRQFGAPRTGAATGQVRPPLPAT
RVPVQAAPAGQRVAGMGAPAQQQMRLGAGAQLAAKQYQKFAVPRQGLQGQMPAQESQPVQ
ALLVPGQEPLTAQMLAAAPAQEQKQMLGERLFALIAETHKELAGKITGMLLEIDNSELLH
MLEIREALNKKVEEAVQVLMNHQKEGTKAAVQNTVPAQ
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccccaggacaaaattatcctatgaattctctttacgtcggtgatcttaaccca
gacgtcacagaagctctgctctttgagaagttttcatcaaccggaccgattttgtctatt
cgagtctgtcgtgacatgatcacacgtcgttcgttgggctacgcctacgtgaatttccaa
caaccagcagatgctgagcgtgccttagacacaatgaactttgacccactgaaaggtcgt
ccaatacgcatcatgtggtcacaacgtgatccctcactcaggaaatccggagttggtaat
gtcttcattaaaaaccttgacaaatctattgacaacaaggccatgtatgatactttctct
gccttcggacacatcttatcttgtaaggttgtcacagacgaaaatggtgtcaacaaaggt
tatggatttgttcactttgaaacccaagaagcagccaataaagccattgaaaaggttaat
ggcatgttgctgaatggaaagaaagtgtacgtaggttatttcatccctcgaaaagaacgt
ttgatgcagatgggtgaccatcagaagaaatttaccaatgttttcatcaagaacttggcc
gaggacattgatgatactaaacttgctgactttggtagccagtatggacctatcctttct
gccaagataatgtatgacgattcaaagagcaaaggctttggattcatcagctttgagaat
catgaggctgcaaatgattttgtcaacagtatcaatggctcagaggtgaatggcaggacc
ttgtatgctggtcgtgctcagaagaaggcagaaagggctgcagaactcaaagccagattt
gaggcattgaaacaggaaaggagcacacgttatcagggcgtaaacttgtacatcaagaac
ttggatgatgagattgacgatgagagacttcgcaaggagttcagcagatatggcacaatc
actagtgccaaggtcatgagtgatgacaaggcgaactccaagggatttggatttgtctgt
ttctcgtctcccgaggaggctacaaaggctgtcacagagatgaacggccgtatccttgta
gccaaacctctgtatgtagcccttgctcaacggaaagaggaacgtcgggcacagctggca
tcccagtatatgcagcgcgtcgctccacaagtccgtgttgggcaagcgagccagccggtg
aacccagtttatccaatggctgcctaccactatgcagctatgccccaaactcagaggaac
atcttccctgcaggccagttagctcaagtcagacatccaagatgggggcaacagcctcag
caggctaggacagctactcaacccaactaccagaccatgcaaggagctgcaggacgtcag
tttggtgcccccaggactggtgcagccactggacaagtccgtccacccttgccagcaaca
cgtgtgccagtccaggctgcaccagctggtcagcgtgtcgcaggtatgggagcccctgct
cagcagcagatgcgtcttggtgccggagcccaacttgcagccaagcagtatcagaagttt
gctgttccaaggcagggcttgcaaggacaaatgccagcgcaggaatcacaaccagtgcag
gctctccttgtgccgggtcaggagcccctgactgcccagatgttggctgccgcccctgcc
caagagcagaagcagatgttgggtgagcgtctctttgccctcatcgcagagacccacaag
gaacttgctggaaagatcactggcatgttgttggagattgacaactctgagctgcttcac
atgttggaaatccgggaagccctgaacaagaaggttgaggaggctgttcaggtactgatg
aaccaccagaaggaaggaaccaaggctgctgtacagaacacagtccctgcccagtag
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