Lytechinus variegatus (green sea urchin): 121419198
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Entry
121419198 CDS
T11173
Name
(RefSeq) pre-mRNA-processing factor 39-like
KO
K13217
pre-mRNA-processing factor 39
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121419198
Spliceosome [BR:
lvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121419198
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_7
TPR_6
PPTA
Motif
Other DBs
NCBI-GeneID:
121419198
NCBI-ProteinID:
XP_041469488
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All DBs
Position
7:complement(37737328..37759506)
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AA seq
804 aa
AA seq
DB search
MARGRRGRGRGGKAKVDENAGGANEAGNAEQDKVEDIDEFEVDENGEDDDGEIDDSILEE
EEVEGGAIDDEADKSESKDAKGDDVQPSEETPMETQEATKESEVEEKTEDKPAEQASEKA
AEKPAEEEKEASQEEAVEDTKEKSSASEESKKEGGSRKRKKKERTRPYELEKYWKAVKTN
PADFTGWTYLLQYVEQEDYMPFYREAFDAFFKCYPYCYGYWKKYADSERKKGTIEKCWEV
FERGLKAIPLSSDLWLHYVSVMGQHIPRSDETRADKLRALYERALEVAGMDFRSDKLWDQ
YINFEKKEQKDWKRVMQLYDRILKIPTQLYRHHFDKLKEFIQAHLPKQYLDFDEFLNFRE
QVVAEASTGDMDDEIPGEDVPPGEEAPPGEEAPPGVGPPSTKVIEGENKLIQEKVVESRR
AIFRKTEQEVSKRWAYEEAIRRPYFHAKPLEKGQLKTWREYLEFEESIGNHDRTVLLYER
CLIACALYEEFWIKYARYMEKTGQEAASEVFKRACGIHLPSKPAINIQWAAFEEKYGNID
RAREILEQLQTKQQDSVMIRLERINFERRAGNNDEVIRLYEGCIDDAKTATGQSFFAGKL
ARFYQKILGDTDTAIKVLEKVLVQKQVSPVLKEQIYTLIMDVEYQRSPLNEEKMTAIFDT
VISSNVPQDVKIQFAQRKIQFLQDFGNNPAATHDAVDEHQKLVKNISSSKKRSADSSGDA
PSTPNTTSQTSSDTKAPEKKKAKTTNNQNDNNSSGSGYNYNSGYNYNQQSGGTATTTAAA
AANTGMGGAEMSWASWGAWGAAQQ
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggggaagaagaggcagaggccgtggtgggaaagccaaagttgatgagaatgcg
ggtggggctaatgaagctggcaatgcagaacaagataaggttgaagacattgacgagttc
gaagttgatgaaaatggtgaagatgatgatggtgaaatagatgattctatactcgaagaa
gaggaagtagaaggaggagcgatagatgatgaagctgacaaatctgaatcaaaggacgcc
aaaggtgatgatgtccaaccctcagaagaaacgccaatggaaacacaagaagccacaaag
gaatctgaagtagaagagaaaacggaagataaaccagcagaacaggcatctgaaaaggca
gcagaaaagcctgctgaagaggaaaaggaagctagccaagaagaggctgtggaagacacg
aaagagaaatcatctgcaagtgaagaatctaagaaggaaggcggatcaaggaagaggaag
aagaaggaacgtaccagaccatacgagcttgagaaatactggaaggcagttaagacgaat
cctgcagacttcactggttggacgtacctgctgcaatatgtggagcaagaggattacatg
ccattttaccgcgaagcttttgatgctttcttcaagtgctatccatattgttatggttac
tggaagaagtatgcagactccgagagaaagaagggtaccatcgagaagtgctgggaggtc
tttgagcgtggattgaaggctattcctctgagctctgatctctggctacattacgtcagt
gtaatgggtcaacatattcctcggtcggatgaaaccagggctgacaaacttagagctttg
tatgaaagggcacttgaagttgctggaatggacttcagatcagataaactgtgggatcag
tatatcaactttgagaagaaagaacagaaggattggaagagagtcatgcagctttatgat
agaatcctcaagataccaacccaactatacagacatcactttgacaaactgaaagagttt
atccaagcccatcttcccaagcagtacctggactttgatgagttcctgaacttccgtgaa
caggtggtagcagaggctagtacaggagacatggatgatgaaatacctggtgaggatgtt
cctcctggagaggaagcaccccctggtgaagaagcacctccaggtgttggtccaccatct
acaaaggtcatagagggagaaaacaagcttattcaagagaaagtagtagaatctcgccga
gccattttcaggaagactgaacaagaggtcagcaagcgttgggcctatgaagaagcgatc
cgtcgtccttacttccatgccaagccgctggagaagggacagctgaagacatggagggaa
tacttggagtttgaagaaagcattggtaaccacgataggacagttctgctttatgagaga
tgcctgattgcatgtgcactctatgaagagttttggattaaatatgctcggtatatggag
aagacaggtcaggaagctgcatcagaagtattcaagagagcatgtgggatccatctacca
tctaaaccagctattaacatacaatgggcagcatttgaagaaaaatatggaaacattgat
cgtgcgagagagatccttgagcagcttcaaaccaagcagcaagattctgtcatgatccgt
ttagaacgcatcaactttgaacgtagagctggcaacaatgatgaggttattaggctctac
gagggttgcattgatgatgctaaaacagccactggacagtctttctttgcaggaaagcta
gcaaggttctatcaaaagattctgggagatactgatactgccatcaaggtgctggagaag
gtgttagttcaaaaacaggttagtcctgtactgaaagagcagatctatacactgatcatg
gatgtggaatatcaacggtcaccactcaatgaagagaagatgactgccatctttgatacg
gtcatctcgagcaacgtacctcaagatgtcaagatacagtttgcacagcgcaagatacag
tttctacaggactttggtaacaaccctgcagcaacccatgatgccgtagatgaacatcag
aagttggtcaagaacatctcatcaagcaagaaacgttcagcagattccagtggggatgcc
ccttctacaccaaacaccaccagccagacttcaagcgataccaaggcaccggagaagaag
aaagctaagacaaccaacaaccagaatgataacaattccagtggttcagggtataactac
aacagtggatataattataaccagcagtctggaggaacagcaacaacaacagcagcagca
gcagctaacacaggaatggggggagctgaaatgagctgggctagctggggtgcctggggt
gctgcccaacaataa
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