Lytechinus variegatus (green sea urchin): 121419293
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Entry
121419293 CDS
T11173
Name
(RefSeq) LOW QUALITY PROTEIN: pinin-like
KO
K13114
pinin
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121419293
03015 mRNA surveillance pathway
121419293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121419293
03041 Spliceosome [BR:
lvg03041
]
121419293
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121419293
Spliceosome [BR:
lvg03041
]
Complex C
Other components
EJC/TREX
121419293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Pinin_SDK_N
Motif
Other DBs
NCBI-GeneID:
121419293
NCBI-ProteinID:
XP_041469619
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All DBs
Position
7:40251591..40265736
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AA seq
489 aa
AA seq
DB search
MATSEGVSAFLAQRLEKAKENLEDVEQNIRKLTGGDNTERRVSVGDSRRLIVGEQRRISG
DQRRHVSDLRRPLTDQRIERRLSGDQRRLSADQRGISGDQRRVSIDAPGVRGRGGGLTVQ
RLSLMERLGAPPAKRPNLGSPFSRLGGRVGPRNRAPSDDEDEDMDYKPLVQSSVVTTLTT
VTPKTRQQTIKEVQKDKKSVDRNKRMFGHLLGTLQKFRDESDSKTDKDKRRKEIEKKLEE
KAVEEKKAVAEERKLLMKERKDKQAELNRLEQLVELTQEHKDWDVHSGLLSNFIRTRAKP
YIFYKPAKWTLGTEKLFKESKQILSAAVEKRKDELAKEIAELEGKPKKEEKKEEDGESKD
RRRSGEDRRKSGEERRRSGEERRRRHSNRDEVKGKMDDRDKSHRGDSEKHGSDEKRRDRK
RTKHEDEKEAKVSKPKDTHEENLQSSKDTEDKPMKETTAETDLDHPEKKKKRKMVKVMMV
RWKVSMKKR
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggctacctccgagggtgtcagcgctttccttgcccaaagactagagaaggccaaagaa
aatttagaagatgttgagcaaaacattcgcaaacttacaggtggagataacactgaaaga
agggtgtctgttggagattcaagaaggctcattgttggagagcagagaagaatatcaggt
gatcagaggaggcatgttagtgacttaaggagacctttaactgaccaaaggattgaaagg
agactctctggtgaccagagaaggttatcagcggatcagagaggcatatctggtgatcag
cggagagtttcaatagatgcaccaggagtacggggtagaggcggaggattaacagtacag
aggctttcactgatggagagacttggggcaccgcctgctaagagacctaacctgggaagt
ccatttagcaggctaggaggaagagttggaccaaggaaccgagcccccagtgatgatgag
gatgaggacatggattacaagcctcttgttcaatcctctgtggtaactaccctaacaaca
gtgacaccaaaaactcgccaacagaccatcaaagaagtacagaaagacaagaagagtgtt
gataggaataagcgaatgtttggtcacctattaggcaccctgcagaagttcagagatgaa
agtgattcaaagacagacaaggataaaagaagaaaggagattgagaagaagctagaagag
aaagctgtagaagagaagaaagctgtggcagaagagagaaaactattaatgaaagagcgg
aaagataaacaggcagagctcaatcgtttagaacagttggttgaactaactcaagagcac
aaggattgggacgttcactctggccttttgagtaacttcatccgcacaagggcaaaaccc
tatatcttctacaaacctgccaaatggactctgggtacagagaaacttttcaaagaatct
aagcagatattaagtgctgctgttgagaagcgtaaagatgagcttgcaaaagagattgct
gagttagaagggaaacccaagaaagaagagaagaaggaagaagatggagaatctaaggac
cggagaaggagcggagaggacagaaggaagagtggcgaggagagaagacggagcggggaa
gagagaagacgtcgtcatagtaaccgtgatgaggtaaagggtaagatggatgatagggat
aaatcacataggggagatagtgagaagcatggaagtgatgagaaacgaagagacaggaag
aggacaaagcatgaagatgaaaaagaagctaaggtctccaaacctaaagacactcatgaa
gaaaatcttcagtcttccaaagacacagaagataaacctatgaaagagacaactgccgaa
acggaccttgatcaccctgaaaagaagaagaaaaggaagatggtgaaggtaatgatggta
agatggaaggtaagtatgaagaagagatga
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integrated database retrieval system
