Lytechinus variegatus (green sea urchin): 121419300
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Entry
121419300 CDS
T11173
Name
(RefSeq) WD repeat-containing protein 43-like
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121419300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lvg03009
]
121419300
Ribosome biogenesis [BR:
lvg03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121419300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_THOC3
Utp12
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_Gbeta
DSE1_N
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR41
Beta-prop_EML
Beta-prop_ACSF4
Beta-prop_NOL10_N
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
ASA1
FAD-depend_C
Beta-prop_SPT8
WD40_like
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
121419300
NCBI-ProteinID:
XP_041469636
LinkDB
All DBs
Position
7:40368763..40393292
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AA seq
661 aa
AA seq
DB search
MATSPNRCCAFSVTDSYFATSSADGRLSIWDSKTGEVNQHYTPSSHLSSSCTCLAWQRKL
RRSEENRKRKKRRSAQADIESTNSEAISPTNLLALGTIAGSVLLYSVLKGDLHSRLDGGH
DDTVNDVCWHSSDNTLYSCSEDMYIVEWDITNRTVRSKWKGDKTSVYSICICPGGTTMLS
AGRTIQLWNLHTKAVLKKFTGHASPVTRLRVVPTFSPDSEKDDPLDSVEGLYFMSSAVSD
RIVNVWQIKSGSKDKAPLASFAVPDEPSDFDVCVSSNSEVYTSVVCQSGQVHIFQTVLNG
RARKPFQARHVVNVTTEGSKLSPARPIPILTSQLHLVEGQPQLKIAYGVNLKPAFESLSL
DSKEKEICLIRDDHLQADKKRDEPGDRVKRPITSGDVTVLGPNNMAPSRPIQGLEEPSKS
ARKKAKRKSLRTELSMEDRLNALSIAQARPDIDKSQPPRADVMVTLLSQGLQSQDRELLD
RVLKQDRAKVVANTIKRLPVPLIVPLVQELARRMNTAPQSGLVIAHWTKEVLRERASYLM
TCPELMLRLSHIYETINTRTSNGGKLGRLHGKLDLMLAQISSQDDTAEASHTDQALMLYE
DESSDELDLMEDGLAIHSESEGEWDELSESSEMEVQQDDQADDSDSEEDEEEVDDDDDDE
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttctccgaacaggtgctgtgctttttctgtcaccgacagttattttgccact
tctagtgcagatggcagactttccatttgggattctaaaacaggagaggttaatcaacat
tacaccccaagttcccatctatcatcgtcgtgtacctgcttggcatggcagcgaaaatta
cgtcgatccgaggaaaatcgaaagagaaagaaaaggagatctgctcaggcagacattgaa
tcaacaaattctgaggccatttcacctaccaaccttcttgctttagggacaatagctgga
agcgttcttctctacagtgtcttaaaaggggacttgcattccagactggatggaggtcat
gatgatacagtcaatgatgtatgctggcattctagtgataatactttatacagctgttca
gaagacatgtacattgtggaatgggatatcacaaataggactgtcagaagtaagtggaaa
ggagacaaaacatctgtgtattcaatctgtatttgtccgggaggaactacaatgctaagt
gcaggcagaacaatccaactctggaatcttcacaccaaagctgtcttaaaaaaattcact
ggtcatgccagccctgtgactagactgagggtggtaccaacattttcaccagattcggag
aaagatgatcctctggactcggttgaaggactctatttcatgtcatcagctgttagtgat
agaattgtgaatgtttggcaaattaagtcgggcagtaaggacaaggctcctcttgcctca
tttgctgttccagatgagcccagtgattttgatgtctgtgtgtcttcaaattcggaggta
tacacttctgtagtctgtcagtcaggacaagtccacatattccagactgtacttaatgga
agggcaagaaaaccatttcaagcaagacatgtggtcaacgtgacaacagagggaagcaaa
ctttctcctgcaaggcctattccaatcctgacatcacaacttcatttagttgaaggtcaa
ccacaactcaagattgcctatggtgtcaatctcaagccagcttttgaatcattaagttta
gattccaaagagaaagagatctgtttaatacgagatgaccacttacaagcagataagaaa
agagatgaacctggagacagagtgaaaagaccaataacatcaggtgatgtgacagtattg
ggtccaaacaacatggcacctagtcgaccaattcagggacttgaagaaccgtcaaaatca
gcgcggaagaaggctaaaaggaaatctcttagaacagagctaagtatggaagacagattg
aatgcccttagtattgctcaagctagaccagacattgataaaagtcaacctccacgagct
gatgtcatggtaacattactatcacaaggacttcagagtcaggacagggaactactagat
agagtactgaagcaggaccgagctaaagtagtcgccaacacgataaagagactaccagta
cctctcatcgtaccccttgttcaagagctagccagaaggatgaacactgctccgcaaagc
ggattggtaattgcccactggacaaaagaagttttacgagagagggcgtcctatctcatg
acctgtcctgaactaatgctgagattaagtcatatctatgagaccattaatacaagaaca
agcaatggtggcaaacttggtaggctacatggcaaattggacctcatgttggctcagata
tcatcacaagacgacactgcagaggctagccatacagaccaagcactgatgctctatgaa
gatgaatcttcagatgagttagaccttatggaggatggacttgctatccactcagaatca
gagggtgaatgggatgagctttcagaatcctcagaaatggaagtacagcaagacgatcag
gcagatgattcagatagtgaagaggatgaagaggaagttgatgacgatgatgacgacgaa
acatga
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