Lytechinus variegatus (green sea urchin): 121419375
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Entry
121419375 CDS
T11173
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03008
Ribosome biogenesis in eukaryotes
lvg03013
Nucleocytoplasmic transport
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121419375
03015 mRNA surveillance pathway
121419375
03008 Ribosome biogenesis in eukaryotes
121419375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121419375
03009 Ribosome biogenesis [BR:
lvg03009
]
121419375
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121419375
mRNA cycle factors
Stress granule specific factors
121419375
Ribosome biogenesis [BR:
lvg03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
121419375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
UBA_8
UBA_4
LRR_8
NTF2
LRR_9
HARP
Motif
Other DBs
NCBI-GeneID:
121419375
NCBI-ProteinID:
XP_041469746
LinkDB
All DBs
Position
7:42884627..42912435
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AA seq
748 aa
AA seq
DB search
MSSFQRHGDFTVTKSTKGGGRNYYGHDDRTRETPSGHWRGGGRGGGGGGGGGRGGRGGGR
GGGGGNRNDWDQSDRYDRNDNFRGQGRNDYDRYNDRDGGYRGRGRGGGQTGGNSGGGGSG
GGGKWRGSRGGGRRDKRRGGGGGHRGDGAGGGMNNRDSDQVHPRSRLEDDDVSMDDGDNP
KANSRFNPYGNRKSGASQRRSQNNDRRGGSSQSSMSRLGLPFKDGSRHSGRDDETWCKIT
IPYGKKSEKEWLIKTIQGACKEPFIPQEFTYDNQNAIFYVDDLATGEALKDVSTRITTPS
GYKIIIQTRPCRPPMKSVFNEKDLDLLKQVMSRRYDPSAKSLDLGNLTNDADLKGKLFLI
VERPAHFAAILKIITENIPEMTILQLDANKLYNLKSMSDLPLKMPNITTLSLARNNLRSE
GELDNLKGLKLKELTLDGNPLCDNFREQSTYISAVRSRFPKVEILDGSTLPPPINFDLED
TAPLPPMQPNFFAGDQVKAILVPFLERFFKVYDSHDRQPLLEIYHDQSSFSLSIPLNMEP
GQGKTRLSRYLREHQSRNLLVTKDPAQRNKLIKQKKVPIIAYLHDLPATQHDMNSLRIDV
SMAQGNLLCFTVSGTFKEVTSKSNDEVVIAFSRVFLATHHPTTGLCIINDQLCLRPATNQ
QKSSFASPGPTPSTSPVNVPQSMPTPIPQGLGPTQQQMLAEFMRVSGMNADWSMKCLEEN
NWNYEQSGKVFTSLQSEGKIPPEAFKQA
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagttttcagcgtcatggagatttcacagtgacaaaatctactaaaggaggtggt
agaaattactacggacatgatgatcgcactcgagaaacaccaagtggccactggcgaggt
ggaggaagaggagggggaggtggaggaggtggaggaagaggaggaagaggcgggggacga
ggaggaggaggaggaaacagaaacgactgggatcagagtgacagatatgaccgaaatgat
aacttcagaggacaaggacgcaatgactatgacagatataatgacagagatggtggttat
agaggaaggggtagaggtggtggacaaacaggtggtaacagtggaggtggaggaagtggt
ggtggaggaaaatggagaggaagtcgtggaggtggtagaagagataaaaggagaggagga
ggaggaggtcatcgaggggatggagctggaggaggaatgaataatagggattcagaccaa
gttcatccaaggtcaagattagaagatgatgatgtatcaatggatgatggagacaatcca
aaagcaaattcgagatttaatccgtatggaaaccgtaaatctggagcaagtcagaggaga
tcacagaacaatgatagaagaggaggttcatcacaaagctctatgtcaagattaggttta
ccattcaaggatggttctaggcatagtggaagggatgatgaaacatggtgtaaaattact
ataccatatgggaagaagagtgagaaggaatggctcatcaaaactatccaaggtgcttgt
aaagaaccttttataccacaagagtttacttatgataatcagaatgcaatcttttatgtg
gatgatttagctaccggtgaagctttgaaagatgttagcaccagaataacaaccccaagt
ggatacaagatcatcattcagactcgtccatgcagaccacccatgaaatcggtgtttaat
gaaaaagatcttgatctactcaaacaagttatgagcagacgttacgatccctcagccaaa
tcactagaccttgggaatctgacaaatgatgctgatttgaaagggaagctgttcctcatt
gtagaaagaccagcccactttgctgcaatccttaaaataattactgaaaacattccagag
atgacaatacttcaacttgatgctaacaagctatacaatctgaagagcatgtctgatcta
ccgcttaagatgccaaatatcacaacactcagcctggcacgtaacaatttgagatctgaa
ggagagctagacaatctgaaaggactcaagctgaaggagttaactctcgatggtaaccct
ctatgtgataacttcagagaacaatcaacatatatcagcgctgttcgatcaagatttccc
aaggtagagatcttggatggaagcacactaccccctcctatcaactttgacctggaagac
actgctccattaccccctatgcaaccaaacttctttgcaggggaccaagtcaaagcaatc
ttggttccattcttggaaaggttcttcaaagtatatgattcccatgacagacaaccactg
cttgaaatctatcatgatcagtcaagtttctcattatcaatacctttgaacatggagcct
ggccaagggaagacccgtcttagccgttatttgagagaacatcaaagccgtaatctactt
gtcacaaaggacccagctcaaaggaacaagctaataaagcagaagaaagtacctatcata
gcctaccttcatgatctaccagccactcaacatgatatgaattccctgaggattgatgta
tccatggcacagggaaatctactatgtttcacagtcagtggtactttcaaagaagttacc
agcaagtccaacgatgaggtagtaattgcattcagtagggtattcttagctacacatcat
cctactacgggcctatgtatcatcaatgatcaactctgcctaagaccagctaccaaccaa
caaaagagttcatttgctagccctggtcctacaccatctactagtcctgtcaacgttcct
caatcaatgccaacaccaataccacaaggacttggcccaacacagcaacagatgcttgct
gaattcatgagagtctctggtatgaatgctgattggtctatgaagtgtctagaagagaat
aactggaattatgaacaatcagggaaggttttcacaagtttacagagtgaagggaagatt
ccaccagaagcattcaagcaagcatga
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