KEGG   Lytechinus variegatus (green sea urchin): 121419874
Entry
121419874         CDS       T11173                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
lvg  Lytechinus variegatus (green sea urchin)
Pathway
lvg03030  DNA replication
lvg03410  Base excision repair
lvg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lvg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    121419874
   03410 Base excision repair
    121419874
   03420 Nucleotide excision repair
    121419874
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lvg03032]
    121419874
   03400 DNA repair and recombination proteins [BR:lvg03400]
    121419874
Enzymes [BR:lvg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     121419874
DNA replication proteins [BR:lvg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    121419874
DNA repair and recombination proteins [BR:lvg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      121419874
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 zf-DPOE DNA_pol_B DNA_pol_B_exo2 RNase_H_2 APP_N
Other DBs
NCBI-GeneID: 121419874
NCBI-ProteinID: XP_041470270
LinkDB
Position
8:complement(5108929..5168891)
AA seq 2285 aa
MVLQNSGRYRADRSENADGSGGGSSRRSEDSSEARLQRATINDELDSLYGFDRYKEPAER
VGWLINMHPADILDESKKLISAVDYYFLQDDGSRFKVSLPFKPYFYIVTKKECEREVSAY
LTRRHAGTLASVETVYKEDLDLPNHLVGLKRCCLKLSFHSTQDLMKVRREIMPRVRKNRE
HEKSSSAYTALLTSHLAGNDSTVGSKGGKKINDQMDNILDIREYDVPYHVRVAIDKKIHV
GHWYSVQGRGSMAPIIKQRDDLLERPDPVVLAFDIETTKLPLKFPDAETDSVMMISYMID
GQGYLITNREIISEDVEDFEYTPKPEFEGPFIVFNEENEVACLQKFIDHIVEIKPNIIVT
YNGDNFDWPFIETRYKHHGIDMYREIGFQKDAAGEYKCRSVIHMDAYRWVKRDSYLPVGS
QNLKAASKAKLRYDPIEMDPEEMCRMASEQPQTLANYSVSDAVATYYLYMKYVHPFIFAL
CTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEAVFNKLTRDGHLLETETYVG
GHVEALESGVFRSDLPCRFRMVPEAFQQLMDDVERTMKHAIEVEEKIPLSTVTNFEEVCE
EIKEKLAALRDNPARLENPVIYHLDVGAMYPNIILTNRLQPSAMVDEAVCAACDFNKPGA
RCQRKMAWMWRGDYMPASRGEYHRIQQQLEIEKIPPANPGEPHRVFHELGKEEQAMLEKK
RLQEYCRKAYKKTKITKQEERDTTICQRENSFYVDTVRAFRDRRYEFKGLLKVWKKKVVA
ATEKGDAAEIKSAKNKEILYDSLQLAHKCILNSFYGYVMRKGSRWYSMEMAGIVCYTGAG
IITRARELIEQIGRPLELDTDGIWCVMPASFPENFDIKTTNPKKPKVAVSYPGAMLNIMV
FDYNTNDQYQELVDPSNLTYEVRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNF
DGSLAELKGFEVKRNGELQLIKIFQASVFEAFLKGVTLEECYSAVAKIADYWLDVLYSKA
VDMPDCELFDLISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDKGLACKFVIA
RKPEGAPVTERAIPLAIFQAEPSIKKHYLKKWLKHQTMTDFDIRTILDWNYYIERLGSCI
QKIITIPAALQQVSNPVPRVAHPDWLHKKLCEKNDVFKQQKISEMFVRKPKIVQQEIESS
VPMESESQPDIVDVEDFGAPSGGKKRSPKVAVATKRKRDDAGRNGRIDSNGALTQSWEDV
LGPPPDMGRKRKTIKKWVEYHKQKWALQARQRKERKRRRLDDGMDAGVGGVVRAVSSTGL
GSFFRRTAKTMLDQPWQIIQIMETGHPGLFKLWALIGSDLHHIKLMVPRIFYVNQRTPKE
ATEGAMWRKVTRTLPRSNPVLNLYQYTVPEDVYQQHANELTADLAAPDIEGVYETQVPLE
FRALMKLGCVCMVNRQHAKFLLGGDMDTFDLSQLEFKTLAQFQYLPSGSLRRVYFYQNIV
GSKCMMGLFFSTSAKATIIAVDTVRTNQMPNLTSMYQHERQAKSERSSENELLPREDHTF
DIVVEKDMKKAYRTIHRLLLAYKDEKRGPTFISVQASLSNRELVRSIPAMEEFPLVKLHI
AESENIYSVLDWQRQGSRRLLQHYLNADYLLLSYLEQSRYFHIPVGNLPEDAGIAGADLF
FARHLNKHGHVMWASPTNRPDLGGKEADDNRLVTEFDESGGAELNQSGCYQTVCVDLDMA
NLAVNTLLQSHQVSELEGAAGSIAFDAIQQTSLEDMVSGQPGAAASLASYDETALCTVSF
RIMKTMVHGWLRDVTAYHNVFADYQIMHYYRWLCSPSSLLYDPALRRTLNGLMKKLFLQL
MSEFKRLGAVIVHANYNQIVICTKKTRIVDAITYVDYVTNTIKSNDLFHGVELSYKQCWQ
LLMWLDTANHGGVKGKIPESLEGDNNENHDDDDDVIMATPPNQTDTEEEVEMNWNIMHYL
PTAENCQTTFNMIIAGYILAIHKHIKEEQERATPGNTPIRRRNNQSQTQKTQGDPTTTPS
LVSYSQGLVDEELSQRLFAITQDIQKRLSGSRQSRLEASSEFPQLPGSYLPLNNPALEFV
KAITKVLSLDTNIVSQVSRMKRNLLRLIGVGEFSDDADWRDPCLSYILPEVICRFCNHCR
DLDLCRDPMLIQDGQSAVLWQCIQCQSEYDVSSIEASLVEALQKASMAYTLQDLSCSKCH
QVKLSNMASYCECAGQFATVITHDAFMNKMKTFSNIARHYEMKLLQETVTMILRMNPVHD
VSTKG
NT seq 6858 nt   +upstreamnt  +downstreamnt
atggttctgcagaacagcggccgctacagggccgatcgcagtgagaacgccgatggttcc
gggggaggtagtagcagaagatcagaggattcatctgaggccagactacagagggcgaca
atcaatgatgaattggattccttgtatggatttgatcgctacaaagaaccagctgagagg
gtgggatggctcatcaacatgcatccagcagacattttggatgagagtaaaaagctaatc
agtgcagtggactactatttcctacaagatgatggtagtcgtttcaaggtttccctcccg
ttcaaaccttacttctacatcgtcaccaagaaggaatgtgagagggaggtatccgcgtac
ctgacccggagacacgccggaacacttgcttcagtggaaacggtctataaggaagacctt
gacttgccaaatcacttggtgggtctgaagagatgttgcctgaagctaagcttccactcg
acacaggatctaatgaaggtgcgacgagagatcatgccgagggttcgcaagaatcgagag
cacgagaaatcttcctctgcatacactgcccttctaaccagccatcttgctgggaatgat
agtactgttggcagcaaaggagggaagaagataaacgatcagatggacaatatacttgat
atcagagaatatgatgtcccttaccatgttagagtggccattgataagaagattcatgtg
ggtcattggtattcagtgcagggaagaggatctatggcacctatcatcaaacagagagat
gatttattagaaagaccggacccagtagtacttgcctttgatattgagaccaccaaactt
cccctcaagttccctgatgcagagacagacagcgtcatgatgatctcatatatgatagat
ggacagggttatctaatcactaatcgtgagatcatctcagaagatgtggaagactttgaa
tacaccccaaagcctgagttcgaaggaccgttcatcgttttcaatgaggagaacgaggtc
gcctgccttcagaaattcatcgatcacatcgtcgagatcaaacccaacatcattgtcaca
tacaatggagacaattttgattggcctttcatcgagaccagatataaacatcatggtatt
gatatgtacagagagattgggtttcagaaggatgccgctggtgaatacaagtgcaggagt
gtgatacatatggatgcttatagatgggtcaagcgtgacagctaccttcctgttggctct
cagaacttaaaggcagcatccaaggccaagcttcgatacgaccctattgagatggacccg
gaggagatgtgccgcatggccagtgagcaaccccaaacccttgccaactactccgtctcg
gatgcggtggcgacatactatctgtacatgaaatatgtgcatccttttatcttcgcactg
tgcaccatcattcctatggaacctgatgaggtcttgcggaagggatctggaactctttgc
gaggccttgttgatggtccaggccttccatgccaacatcatcttcccaaacaaacaagag
gcggtcttcaataagctgaccagggatggccatctcttggagaccgagacttacgtcgga
ggtcacgttgaggcgctggaatctggtgtatttagaagtgacctgccttgccgcttcaga
atggtccccgaggccttccagcagttgatggacgatgttgagagaacaatgaagcatgcc
atcgaggtcgaggagaagatcccgctcagtaccgtcacaaactttgaagaggtctgtgag
gagatcaaggaaaaattagccgccctccgtgacaaccctgctaggcttgagaatcctgtt
atctatcatcttgatgtcggagcaatgtaccctaatataatccttactaacaggttacag
ccttcagccatggtagatgaagccgtttgtgcagcatgtgatttcaacaaaccaggagct
cggtgtcagagaaaaatggcatggatgtggagaggagattacatgccagcttcaaggggt
gagtaccacaggattcaacagcagcttgagatagagaagatccctccagccaatccgggc
gagcctcacagagtcttccatgaacttggtaaagaagaacaggccatgctggaaaagaaa
agacttcaagagtattgtcgtaaagcgtacaagaagacaaagattacaaagcaagaagaa
agagatactactatctgccagagagagaactctttctacgtcgacactgtgagggcgttc
agagatcgacgttatgagttcaaagggcttctaaaggtttggaagaagaaggttgttgct
gcgacagagaagggtgatgctgctgagatcaagagtgctaagaacaaggagattctctat
gactctctacagctggctcataagtgtatcctcaactcattctatggatatgtcatgagg
aaaggatctcgatggtactcaatggagatggctggtattgtatgctacactggagctggg
atcatcactcgagctagagaactcatcgaacagatcgggcgccctctagagttggataca
gacggtatctggtgtgtgatgccagccagcttccctgagaactttgacatcaagaccacc
aacccaaagaagcccaaagtagccgtttcttatcccggtgcaatgctgaacatcatggtg
tttgactacaacacaaatgaccagtaccaggagttggttgaccccagcaatttgacgtat
gaggtcaggagtgagaactctatcttctttgaagtagacgggccataccttgccatgatc
ctcccagcatccaaggaagagggcaagaagttgaagaagaggtatgcagtgtttaacttt
gatggatcgttggccgagctgaaggggtttgaggtgaagcggaacggagagcttcagttg
atcaagatcttccaagcgtctgtctttgaagcattcttgaaaggtgtaacccttgaggaa
tgctactctgccgttgccaagattgccgactactggcttgatgtgctctacagcaaggct
gtggacatgccagactgcgagctgtttgacttgatctctgagaatcggagtatgtctcgc
aaacttgaggattatggcgaacagaaatccacctccatcagcacggctaagagactcgct
gagttccttggtgatcagatggtaaaggataagggcttggcgtgcaagtttgtcatcgca
aggaagccagagggtgccccggtcaccgagagagccatcccgctagcgatcttccaggct
gagccgagcatcaagaaacactacctcaagaaatggctaaagcatcagactatgacagac
tttgacatcagaacgattctagactggaactactacattgagcgattaggtagctgtatt
cagaagatcatcaccataccagctgcgcttcaacaggtatccaacccagtcccacgtgta
gctcatcctgactggctccacaagaaactttgtgagaagaatgatgttttcaaacaacag
aagatcagtgagatgtttgttaggaaaccaaagattgtgcaacaagaaatagaatcatcc
gttcctatggagtctgaaagccaacctgatattgtggatgtggaagactttggggctccc
tctggaggtaagaagaggtcacccaaggtcgctgtggcaaccaagagaaagcgggacgat
gctgggaggaacggcaggattgatagcaacggagccctgacacagtcttgggaggatgtt
ctaggaccaccccctgatatgggcaggaagagaaaaacaatcaaaaagtgggtggagtat
cacaaacagaaatgggcgttgcaggcgagacagagaaaagaacgtaaacgacgtcgcctt
gacgatggaatggatgcaggagttggaggcgttgtccgagcggtgtctagcactgggctt
gggagcttcttcagacggacggcaaaaaccatgctggatcaaccttggcagattattcag
atcatggaaaccggtcatccaggtctgttcaagctctgggctctgataggctctgatctc
catcacatcaaactgatggttccaagaatcttctatgtcaaccaacgaaccccaaaagaa
gccacagaaggagcgatgtggaggaaagtgacccgtaccttaccaagatcaaacccagtc
ttgaatctctaccagtacactgtaccagaggatgtctatcagcaacatgcaaatgagctg
acggccgatctagcagctcctgacatcgagggggtctacgaaacacaagtcccgctggag
ttcagagccttgatgaaactgggctgcgtgtgcatggtcaacagacaacatgccaagttt
ctcctaggaggggatatggatacctttgacctcagtcagcttgagtttaagacgttagct
caatttcaataccttccttctgggagtcttagaagggtctacttctaccaaaacattgta
ggctctaagtgcatgatgggattgttcttctcaacgtccgccaaggctacgatcatcgcc
gtggatacggtcaggaccaatcagatgcctaatctcacatccatgtaccaacatgagagg
caggctaagtctgagcgcagcagtgagaatgaactccttcctcgtgaggatcataccttt
gacatcgtggtggaaaaggatatgaaaaaggcataccgtaccattcatcgattgctgcta
gcatacaaggatgagaagcgaggaccaacgttcatctctgtacaggcttcattgagcaac
cgagagctagtgagaagtatcccggctatggaagagtttcccctggttaagcttcacatc
gctgagagtgagaacatctatagtgttctagattggcaaagacaaggctcccgtcgtctg
ctacaacactatctcaatgctgactatttgttgctgagctacttagagcagagtcgttat
ttccacatccccgttggcaacctcccggaggatgccgggatagccggagccgatctcttc
ttcgctcgtcatctcaacaaacatggtcatgtaatgtgggcgtcgcctaccaaccgaccc
gaccttggaggcaaggaggctgatgataatagattggtgactgagtttgatgaatctggt
ggagcagagctaaaccagagtggttgctatcagactgtctgtgttgatcttgacatggcc
aatcttgctgtcaatactctactacaatctcatcaggtcagtgagctggagggagctgcc
ggtagcattgcctttgatgcgatccaacagacatcattagaagatatggtatccgggcag
ccaggagcagcagcctccctcgccagctatgatgaaacggctctctgtacggtgtccttc
aggataatgaagacgatggttcatggatggctacgtgatgtgacagcgtaccataatgtc
tttgctgattaccagatcatgcattattacaggtggctctgttctccctcatccctcctg
tacgaccctgccttgcgacgtaccctcaatggcctcatgaagaaactcttccttcagctc
atgtcagagttcaaacgactcggtgcggtcatcgtccacgccaactacaatcagatcgtg
atctgcacgaagaagacgcgcatcgttgacgccatcacgtacgttgactacgtcacaaac
acaatcaagtccaacgatctgtttcatggtgttgagctctcgtacaagcaatgttggcag
ttacttatgtggcttgatacagccaaccatggtggtgtgaagggtaagataccagaatca
cttgagggagataacaatgagaaccatgatgatgatgatgatgtcatcatggcaacacct
ccaaaccagacagatacagaggaggaggtagagatgaattggaatatcatgcactatctt
ccaactgctgagaattgtcagacaactttcaatatgattattgcgggttatatcctggca
atacacaagcatatcaaggaagaacaagagagggccacacccggcaacacgcccatccgt
cgccgtaacaaccagagccagacccaaaagacgcaaggcgacccaaccaccactccaagc
ctggtcagctactctcaaggattggtggatgaagagctgtctcagagactgtttgcaatc
acccaagatatccagaagagattatctgggagcagacagtctcgtcttgaagcttcttct
gagtttcctcagcttcctggatcctatctacctcttaacaatcctgcactggagtttgtc
aaggcaataaccaaggtgctctccctagataccaacatcgtcagtcaggtcagtcggatg
aagcgtaacctcctccgtctgatcggtgtcggtgagttctctgacgacgctgattggcgt
gatccttgtctctcctacatcttaccagaggtcatctgtcgtttctgtaaccactgccgt
gaccttgacctttgtcgcgaccccatgctcatccaagatggccagtcagccgtactatgg
cagtgtatacaatgccagagtgagtatgatgtatcatcaattgaagcaagtctagtggag
gctctacagaaggcttctatggcttacacacttcaagatcttagctgttccaaatgccac
caggtaaagttgagtaatatggcatcttactgcgagtgtgctggacagtttgctacagtc
attacccatgatgcattcatgaataagatgaagacattcagtaacatcgccaggcattac
gagatgaagcttctacaggagacagtaactatgattcttcgtatgaaccctgtacacgat
gtatctactaaaggatga

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