Lytechinus variegatus (green sea urchin): 121420601
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Entry
121420601 CDS
T11173
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121420601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121420601
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121420601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
121420601
NCBI-ProteinID:
XP_041471201
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All DBs
Position
1:complement(67579314..67619105)
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AA seq
1355 aa
AA seq
DB search
MATLFSYFTKIPGKKTEKTSPKAGDKAETDKPVSPQESAKEKISSKSVFTNGHQTFTPGD
LVWARLEGYPWWPSLVCNHPTLEKCIKKDGKRGLVHVQFFDDPPSRAWISDKLVDPYKGS
QAKECQFGCKFHTTKPDVRRGMDQADEALKKEREERMKLVVCHVPSEDEDEEEEEDEDGM
EIEDASDGSASEDNITSSKRKPRAAAKKAMSTQKKKRRRIMVASDSDSSGDEFKPESDDE
SEGAESSGVDEDDISEPETESDPETPKKAKKRKRGSTSTVTPSTKKPATKGRSVLTPSSM
ARPDSATPPPKKTFGTPSVSSSTKAKLSAFQSPAPAPSPTPASESDEARFPHQRQEWLKP
GKRKDIKGRPEHDPEYDPSTLFVPKTFLDKCTPAMRQWWEMKSKYYNAVLFFKMGKFYEL
YHMDAEVAVKELGLIYMKGENAHSGFPEIAFSRYSDTLIQKGYRVARVEQTETPDMMQER
VKNMSRSVTKFDKVVKREICRISTQATRTYSFIDGDTCEAQSSYLLAVTERPSESSGGES
VYGVCFVETSIGKFYIGQFEDDRHSSRFRTLIAHYPPSQVLFERGKLLGKTQQLLSSNLM
SVLKDSLLPGSEFWDAAKTLKVLKEKDYFEDSERDKDEEEKGGLNCWPDELKEMLSDADP
LGLTPKEGCEMALSALGACTWYLKKCCLEQELLSMRNFEVYKPLDAEPTKPSSPLPTFTS
KQHMVLDSITLSNLDIIENSSTGTREGTLLETLDRCRTPFGKRLFKQWLCTPLCNPKSIS
DRLDAIEDLHNNPDIVAEVAELIKKLPDLERLLSKIHTLGSSKRNLDHPDSRAIFFEDAV
YSKRKISDFITALDGFESGLKVVKLFKKAVPDFKSSLLKACVSLKLTGGKYPDYADTLEF
FETAFDQKKAKEKGAIIPCKGVIPEYDNAISDMADTKDRLQEYLEKQKKRLGCRNMVYWG
TAKNRFQMEIPESALSRHIPEEYELQSSKKGYKRYWSPTIQKLLAEMMNAEDRRDAALKD
SMRRVFHKFDEHYKSWDAAVQCLSVLDVLMSFADYSQSADGNMCRPDIILPSESDQPYIA
IVEGRHPCIAHTFAGGDYIPNDTFIGIRNENEMDDGEGNHVNSSCILVTGPNMGGKSTLM
RQAGLIVVMAQLGCYVPAEGCRLTPVDRVFTRLGARDNILSGESTFFVELSETASILKHA
SKHSLVLMDELGRGTATYDGTAIATAVVKELSEVVGCRTLFSTHYHSLVEDFSHDPNIRL
GHMACMVENENDEDPSQETITFLYKFVGGACPKSYGFNAARLADIPDEIIQVARRKAKEF
EESAERIKSFRSIHKMCGTSSKLDITKFKQIVARI
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccttattctcctattttaccaagataccaggtaaaaaaacagagaaaacatca
cccaaagcaggggacaaggcagaaacagataaacccgtttcacctcaagagagtgcaaag
gaaaaaatatcgtcaaaatctgtttttacaaatggacaccagacgtttacccctggggat
ctggtctgggccagactagaaggatatccctggtggcccagccttgtttgcaaccacccc
actctcgagaaatgcatcaagaaggatggcaagcgagggctcgtacatgtccagttcttt
gatgacccacctagtcgtgcctggatcagtgacaaacttgtagatccctacaaagggagc
caggccaaggaatgccagtttggctgcaagttccacaccaccaaaccagacgtgaggagg
ggaatggatcaggccgatgaggcactcaagaaagaaagggaggaaaggatgaaactcgtt
gtctgccatgttccatcagaagatgaagatgaggaggaggaggaggatgaggatgggatg
gagattgaagatgcaagtgacggcagtgcaagtgaagacaacatcacaagcagtaaaaga
aagccaagggcagctgctaagaaagccatgagcacacagaagaagaaacgaaggagaatc
atggttgcctctgacagtgatagttcaggagatgaattcaaacctgaaagtgatgatgaa
tctgaaggagctgagagcagcggagtggatgaagatgacatctcagaacctgagacggag
tcggaccctgaaacaccaaagaaagctaaaaagcgaaagaggggttccacttcaactgtc
actccttccacaaaaaagcctgcaacgaagggtcgtagcgtcctaactccatcttctatg
gcacgcccagattccgctaccccaccccctaagaagacatttggcacgccgtctgtcagc
tcttccaccaaagctaagctctctgcattccagtctcctgcccctgctccatctccaacc
cctgcatctgaatcagacgaagcacgctttccacatcaacgacaggaatggctgaaacca
ggcaaaagaaaagacatcaaaggcagaccagagcatgacccagaatatgatcccagtact
ctcttcgtgccaaagacgttcttggacaaatgcacccctgctatgagacaatggtgggag
atgaaatccaagtattataatgctgttcttttctttaagatgggaaaattctatgaactg
tatcacatggatgcagaggtagccgtcaaagagcttggactcatctacatgaagggagag
aatgcacattccggtttccctgagatagcgtttagtcggtatagtgatacgctaatccag
aaggggtaccgtgttgctcgggtggaacagacggagaccccagatatgatgcaggaaaga
gttaaaaacatgagcagatctgtaacaaaatttgacaaagttgtcaagagagagatatgc
aggatttcaacacaagcgacaagaacctatagctttatagatggggatacatgtgaggca
cagagcagctatcttcttgcagtcacagagaggccgagtgaaagctctggtggggagagt
gtctacggtgtgtgctttgtggaaacatccattggcaaattctatattggtcagtttgag
gatgaccgtcacagttctagattcaggacactgatagctcactatcctccttcccaggtt
ttgtttgaacgtggcaagctcctcgggaagactcagcagctcctgtccagtaacctgatg
tccgtcctcaaagactctctccttcctggatccgagttctgggatgccgcaaagacactg
aaggtactcaaggagaaggattactttgaggatagcgagagagacaaggatgaagaggag
aagggaggactgaactgctggccagatgaactgaaagagatgctatctgatgccgatcct
cttggattgactcctaaggagggatgtgagatggctttatctgctcttggggcatgtaca
tggtacctcaagaagtgctgtctggagcaggagctgttgtccatgaggaactttgaggtg
tacaaaccgctagatgcagagcccaccaaaccctcctcacccctcccaaccttcacatct
aaacaacacatggtcctagacagtataacactgagcaacctcgacatcattgagaatagc
agcaccggaacaagagagggcaccctactggagacgctagatcgctgtcggacaccattt
gggaagaggctgttcaaacaatggctctgcacccctctgtgcaatccaaagtctatcagt
gatagactggatgccattgaagatctccataacaatccagatattgtagcagaggttgcg
gaactcatcaaaaagctgcctgatcttgaaagactactcagcaagatccatactcttggt
tcatccaagaggaacttggaccatccagacagcagagctattttctttgaagatgcagtc
tatagtaaacgcaagatcagtgacttcatcactgcactagatggctttgagagtggtctc
aaggtcgttaaactcttcaagaaagctgtgcctgattttaagtcatcattactaaaggct
tgtgtatctctgaagttgactggaggcaagtaccctgactatgcggacacattggagttc
tttgagactgcgtttgatcagaagaaagcaaaggaaaaaggagccatcatcccatgtaag
ggtgtcatcccagaatatgacaatgccatctccgacatggccgacaccaaggacaggctc
caagagtacttggagaaacagaagaagaggcttggctgcaggaacatggtctactggggc
acggccaagaaccgattccaaatggagatcccggagtctgccctctctcgccacattccc
gaagagtatgagctccagtcttccaagaagggttacaaacgctactggtctccgacgatt
cagaagctgctagcggaaatgatgaatgcagaggacaggcgagatgctgccctcaaagac
tcgatgaggagagtctttcataaatttgatgagcactacaagtcctgggatgctgctgtc
cagtgcctgtcagttcttgatgtcttgatgagctttgctgattatagccagtctgcagat
ggcaacatgtgtagacccgatatcatactgccctctgagagtgaccagccgtacatcgct
attgtagaaggacgtcatccttgcatagcacataccttcgctggaggggactacatccct
aacgacacatttataggcattagaaacgagaacgagatggatgatggagagggtaaccat
gtcaacagcagctgtatcctggtgacgggacccaacatgggtggcaagtcaaccctgatg
agacaggcagggctgattgtcgtcatggcacagcttggatgctatgtccctgcagagggt
tgtagattgacaccggtagacagggtctttacaaggcttggtgcaagagataacatttta
tcaggtgagagcaccttctttgtggagctcagcgagacggccagcatcctcaaacatgcc
tccaagcattcccttgttcttatggacgagctagggcggggcacggcaacgtacgacggc
acagccatagcaacggctgtcgtgaaggaactttcagaggtggttggatgtaggacactc
ttctcaacccactatcattccctagtggaagacttctctcatgacccgaacatcaggcta
ggtcacatggcatgtatggttgagaatgagaatgatgaagacccctcacaggaaaccatc
acattcctctacaagtttgttggaggggcttgtccaaaaagctatggtttcaatgctgcc
cgattggctgacataccagatgagattattcaggttgctcgtcggaaagccaaggagttt
gaagagtccgccgagcgaattaaatccttccgttctattcacaagatgtgcggaacatct
tccaagcttgatatcaccaaattcaagcaaatcgtggcacgaatatga
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