Lytechinus variegatus (green sea urchin): 121421317
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Entry
121421317 CDS
T11173
Name
(RefSeq) nuclear pore complex protein Nup50-like
KO
K14295
nuclear pore complex protein Nup50
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121421317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121421317
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121421317
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP50
Ran_BP1
Motif
Other DBs
NCBI-GeneID:
121421317
NCBI-ProteinID:
XP_041471934
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Position
9:20521530..20546249
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AA seq
550 aa
AA seq
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MSKRRAGVELTHDNWDQDEEVVEEAGTFAVADNETLSRRPMIKAKRRVKGQQQEKETILP
PAQTPFAAFKGFSGFGASTQSSSTPSASFGSKPASFSSKPDSSASFGSKPASFSSKPDSS
ASFGSKPASFSSKPDSSASFGSNSLSFGSKPVSSASFGSKPDSSASTGEPQTKKTVTFES
APSSASTFSFKASTDSQPSTNMFTLGKTDTDSKSSSNGSVFSAKSENGSKDVDAYADEIT
ALNRSVSAWIQKHVEGNPVCDLTPIFEDYKKHLGEIEEKQAKRKESKGGEQKDTKVQFGM
GAAEQEKSSSTTAAAFTGFKFGGKPAATESEKAPSAPKTGFSFGDKSSSETKGLSFGTSS
SLSSSSSILGSTTPKFSFGTMPKPASSSQDEKEKEEEESDEPPKVEVKVIEEKDALYSTR
CKVFYKKGSEFKERGVGMLHVKAAGGTAQLLIRADTTLGNIILNIGVVSSMLSQVTKQGK
NKNSIMLLSPLNPPAEKKCPKCNKNYLNPQESTACEEGCAPTPTPLLLRVKTEADADKLI
EQLKKICEDK
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggagagcaggagttgaactcacccatgataactgggaccaagacgaagaa
gtggttgaagaagctggtacgtttgctgttgcggataatgagaccttatcgcgccgaccg
atgatcaaagctaaaaggagagtcaaagggcaacagcaggaaaaggaaacaatcttgcca
ccagcacagaccccattcgctgcattcaaaggattctcagggtttggtgcttccacgcag
agctcatcaacgccatccgcttcgttcggctccaaacccgcttcattcagctccaaacct
gattcatccgcttcgttcggctccaaacccgcttcattcagctccaaaccggattcatcc
gcttcgttcggctccaaacccgcttcattcagctccaaaccggattcatccgcatcgttc
ggctccaactcgctttcatttggctccaaaccggtctcttctgcttcattcggctccaaa
ccggattcatccgcttccaccggtgaaccccaaacaaagaaaactgtcacattcgagtct
gcaccctcatcggcatccacgttcagtttcaaagccagcacggactcgcaaccatccaca
aacatgtttacgttaggcaaaacagacacggactccaaaagctcgtcaaacgggagcgtt
ttctctgcgaagtcggagaacgggagcaaagatgtggatgcgtacgccgatgaaattacg
gcgttgaaccgttcggttagtgcgtggatacagaagcacgttgaggggaaccctgtatgt
gacttgacaccgatttttgaggattataaaaagcacttgggcgagattgaagagaagcaa
gcaaagaggaaagaaagcaaaggaggggagcagaaggacacgaaagtacagtttggaatg
ggtgccgccgagcaagaaaagtcttccagtacgacagcagctgcatttacaggattcaag
tttggtgggaaaccggcagcaacggaaagtgagaaggcaccttcagctccgaaaaccggc
ttcagttttggcgataagtcctcctcggagacgaaaggtttaagcttcgggacatcgtct
tcgttgtcatcgtcctcatccatactgggatcgactacgcccaaattttcttttggaact
atgcccaaaccagcctcctcaagccaagacgagaaagaaaaagaggaagaagaatcagac
gagccaccaaaggtcgaagttaaagtgattgaggagaaggatgccctctattccacgaga
tgtaaggtattctacaagaaaggctccgagttcaaagagaggggcgtcgggatgctgcac
gtcaaagctgcgggaggaaccgctcagcttcttatcagagcagatactacactcggaaac
atcatcttgaacatcggcgtggtatccagcatgctatcacaggtgaccaaacaaggaaag
aacaagaacagcatcatgctactctctcctctaaatcctccggccgagaagaaatgtccc
aagtgcaacaagaactatctaaacccccaagagagtaccgcctgcgaggaaggctgcgcc
ccgacgcctaccccgctcctgcttcgcgtcaagaccgaggcggatgctgacaaactgatt
gaacagctcaagaagatttgtgaagacaagtaa
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