Lytechinus variegatus (green sea urchin): 121421426
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Entry
121421426 CDS
T11173
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03022
Basal transcription factors
lvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121421426
09124 Replication and repair
03420 Nucleotide excision repair
121421426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121421426
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121421426
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121421426
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121421426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Lipoprotein_16
TECR_N
Motif
Other DBs
NCBI-GeneID:
121421426
NCBI-ProteinID:
XP_041472054
LinkDB
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Position
9:complement(11205532..11216887)
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AA seq
568 aa
AA seq
DB search
MATSSEEVLLVVNQVRSRKSNGSLYLMGKRLAWQEDNKEVFTISHYYADVKQQRISQDTS
SKVQLQILLHNGSSTKFHFANREGPAVQKQDRNDVKELLQQLLPKFRSQASRELEQKNKM
LKDDPELFQLYRDLVMSGVMTADEFWASRINMAKQESASSSTTLASTSSDGGQGVGVSAA
FLSDIKPQTDGCNGVKYNLTADIIDSIFRIYPAVRKKHLESVPHTMSEKEFWTCFFQSQY
FHRDRINAGSKDLFAECAKRDEKDMTEEANQTVKDPLLDIQGLSDRTLNEEFGFSLDNVK
HSSNAVNKSIIKRFNHHNTRVLAASESNKRSIDDVDGPSTSSQSSTPSQNSNTNHRVEGG
GDGDESTAKKARLREAIEIEDLASTSKQDGVSLRLERTDRYYHGPTVVQSTDYFSSEEVL
GALRAVQSEVMSSVPNLHKVISSNTARSVMGELTPGGALMASSAHQPVHTLYSPEIQKEV
KRLYAALAELLRHFWSCFPITNRSLEEKVFRMKGTLEQFQAKKMKPFKDTLAKQHIGLNL
MNHMEDLLQTAYKKYAHWQSKKLGAKLS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcatcagaagaagtcttactggttgtgaatcaagtccgtagcaggaagagc
aatggtagcctttatctcatgggtaaacgtctggcctggcaagaagacaacaaagaagtc
tttactatcagccattactatgcagatgtcaagcaacagagaatcagtcaggatacaagt
tccaaagtccagcttcagatcttgcttcacaatgggtcaagcaccaagtttcactttgca
aaccgtgagggtccagcggtccagaagcaagaccgtaacgatgtcaaggagctactccag
cagctgcttccaaagtttcgcagccaagcaagtagagaactggagcagaaaaataagatg
ttgaaggatgatccggaactgtttcagctctaccgtgaccttgtgatgagcggggtcatg
actgcagacgaattctgggccagccgtatcaatatggccaagcaagagagtgcttcgtct
tccaccactttggcttcaaccagcagtgatggaggtcaaggggtcggtgtatcagcagcg
ttcctctctgacatcaaacctcagacggatggttgcaacggtgtcaagtataacctaacg
gcagacatcattgattctatattccgtatctaccctgcagtgagaaagaagcatctagag
agtgtccctcatactatgtccgagaaagagttctggacgtgtttcttccaatctcagtac
ttccatcgagatcgtatcaacgctggaagcaaagatctctttgctgagtgtgctaagaga
gatgagaaagatatgacagaggaagcaaaccaaactgtaaaagatcctcttcttgatata
caggggttatctgacaggacactaaatgaggagtttgggttttctttggacaatgtaaag
cattcaagtaacgctgtcaataaatccatcattaaacggtttaaccatcacaacacacgg
gtactagctgcatcagaatctaacaagagaagcatagacgacgtcgatggaccatcaacc
agctcccaatcttccacaccaagtcagaactcaaacacaaatcatcgagtagagggagga
ggagatggagatgagagcactgcaaagaaagccaggttacgagaagcaatagagattgaa
gatctagcatctacctcgaagcaagatggcgtttccctgaggcttgaaaggacagacagg
tactatcatggtccaaccgttgtccagtctactgattacttctcatcggaggaggtgctt
ggtgccttgagagctgtccagtctgaggtcatgtcttctgtgcctaatctacataaggtt
atctccagtaacacagcaaggtcagtaatgggagagctgacaccagggggcgctctaatg
gcaagctcagcccatcaacctgttcacaccttgtatagtcctgagatccagaaagaagtc
aagaggttgtatgctgcccttgcagagcttctgaggcacttctggtcatgtttccccatc
accaatcgctctcttgaggagaaggtcttcaggatgaaaggcactctggaacagtttcag
gccaagaaaatgaaaccattcaaagatacccttgcaaagcaacatatagggcttaattta
atgaaccacatggaagatctactacaaactgcttacaagaaatacgctcactggcagagt
aagaaacttggtgccaagttatcatga
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