Lytechinus variegatus (green sea urchin): 121421499
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Entry
121421499 CDS
T11173
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121421499
09123 Folding, sorting and degradation
03018 RNA degradation
121421499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121421499
03041 Spliceosome [BR:
lvg03041
]
121421499
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121421499
mRNA degradation factors
5'-3' decay
Lsm complex
121421499
Spliceosome [BR:
lvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121421499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
121421499
NCBI-ProteinID:
XP_041472167
LinkDB
All DBs
Position
1:complement(70162706..70167331)
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AA seq
91 aa
AA seq
DB search
MTTSNPSHLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVVEFETTSEG
RRVTKLDEILLNGNNITMLIPGSEGPEGSDV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgactacttccaacccatctcaccttttacctcttgaacttgttgacaaatgtattggc
tcccggattcacattgttatgaagacagacaaggagattgttggaactctgcttggcttt
gatgactttgtcaacatggtacttgaagatgttgtagaatttgaaacaacatcagaaggt
aggagagtcaccaaactggatgagattcttttgaatgggaataatattacaatgcttatc
cctggaagcgaaggaccagaaggttcagatgtttga
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