Lytechinus variegatus (green sea urchin): 121422264
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Entry
121422264 CDS
T11173
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121422264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121422264
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121422264
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121422264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF2433
Motif
Other DBs
NCBI-GeneID:
121422264
NCBI-ProteinID:
XP_041473113
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Position
10:24627482..24649843
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AA seq
767 aa
AA seq
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MGDKRKLQGEIERCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRD
QIKSWAASNEIKDKRTLLENRRLIETQMERFKVVERETKTKAYSKEGLGLAAKVDPVQKE
KDDVSTWMRGCIDKLTVQIDSFEMEVENITSSSKKRKIPTDRQERLDELSKWLENHRYHI
RQLETLMRMLDNSTIEVDQIKKVQDDLEYYIDYSQDPDFEENEFMYDELEIDDEAGLLAT
SPEEENHLNSDTPLSSSPIVSSSLPSSSNHSKDKVEDEKKSRTKSVDDTSLSSSSSPRKG
SAKSTSSSSSLNSIPITTTSSTQQSRPTITRVSSSPGTSTANSSASFGGLQAPIKNSLSK
ANSVPSATTPHAIAQPPPGPAYAVAAGGQTHNSQGSNAANRVTSQQPTAVSSHMMSNSMS
LSSSTMVQSSSNPQHNNTPRQDMNGPHQGYSIELLTSSVANLSTNSTLSSSSSHITHMAH
STVPSSSSATSSSSMPFMASSMAMPTSSTVETNPVATALSTSAAMLTKSSDAMVNGPLSP
ENKEDDSSSMSTLKTMAQKVVMSSGLENFQSDLITENMAVYNSTSRSESQGQSTTPANST
PQYQETTIPPLLGVAPLGPVTLSKEQRLQQSVMESCFHHLPLPSDSERLRNYLPRNPCPT
PTYHCQVMPHRMGTLEFFMRLSTETLFFIFYYQEGTKAQYLAAKALKRQSWRFHTKYMMW
FQRHEEPKTITEEYEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDREL
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacaagcgaaaactacaaggtgaaatagaaagatgtctcaagaaagttagtgaa
ggagtggaaacgtttgaggacatctggcagaaggttcacaatgcaacaaatagcaatcag
aaggagaaatatgaagcagacttgaaaaaggaaatcaagaagctccagaggttaagagat
caaataaaatcatgggcggcctcaaatgagatcaaggacaagaggacactgttagaaaac
aggagattgattgaaacgcaaatggaaagatttaaagtggtagagagggaaacgaaaacg
aaagcatattcaaaagaaggattagggttagcagcaaaagttgaccctgtgcaaaaggag
aaagatgatgtttcaacgtggatgaggggctgcatagacaagcttacagtgcagatagat
tcatttgaaatggaggttgaaaacatcacgtcgtcttcaaaaaagaggaaaatcccaacg
gataggcaagaaagattagatgagctatcaaagtggttagagaatcaccggtaccacatc
aggcaattagagacgctcatgagaatgttggacaacagcacaatagaggtcgatcagatc
aagaaagtacaggacgatttggagtactacattgactactcacaggatcctgactttgag
gagaatgagttcatgtatgatgaactagaaattgatgatgaagctggtctattagcgact
tcaccggaagaagaaaaccatctgaacagtgacacgccactgagtagttcacccatcgtt
agcagtagtttgccctcctcatcaaaccattccaaagataaggtagaagatgaaaagaaa
tcaagaacgaagtcggtggatgatacatcgttatcgtcatcatcatcgccgaggaaaggt
tcagcaaagagtacgagtagctcatcttcgttgaattccattcccataacaactacatca
tccactcagcagagtagaccaacgataacgagagtatcttcatcaccgggtacgtcaaca
gccaactcttcggcgtcgttcggcggcttgcaagcgccgatcaaaaacagccttagcaaa
gcaaatagcgtaccgtcagcaacgacaccacatgcaatagcacaacctcccccagggcct
gcgtatgctgtagcagcagggggtcagacacacaattcacaagggtcaaatgcagcaaat
cgggttacatcgcaacaaccgacagcagtgtcgtcccatatgatgtccaatagcatgtca
ttaagcagctcaaccatggtgcagtcctcatcgaaccctcaacataacaacactccgaga
caagatatgaatggccctcatcaaggttacagcatagagctcctcacaagcagcgtagcg
aacctgtcgaccaacagcacgctctcatcatcgtcgtcgcacatcactcacatggctcat
agcacagtgccgtcatcatcctctgccacgtcctcatcgtctatgcccttcatggcgtca
tcgatggcaatgcccacctcctcaacggtggagaccaacccagtagccactgccctttcc
acgagtgcagcaatgctgaccaaaagttcagatgctatggtcaatggcccgctaagcccg
gagaataaggaggatgacagcagctcaatgtcaacgctgaagacaatggcacagaaagtt
gtgatgagttcggggttagagaacttccagtccgatctcataacagaaaacatggcagtc
tataacagtacttccaggagcgagagccagggtcagtcaacaacgcctgccaacagcaca
ccgcagtatcaagagaccaccatccctccgttactgggcgtggcgcccctcggacccgtc
acgttatccaaggagcagagactgcaacagagcgtcatggagagctgctttcaccacttg
ccgcttccctcggactcagagaggttaagaaactaccttccaaggaacccatgtcccacc
cctacgtatcattgtcaggtgatgcctcatagaatgggtacactagagttctttatgaga
ttatcaacagagacgttattcttcatcttctattatcaagaaggaacaaaggcccagtat
ttggctgcaaaggccttgaagaggcagtcatggagattccataccaagtacatgatgtgg
tttcaacgacatgaagagccaaagacaatcactgaagaatacgagcaaggaacatacatc
tactttgactatgagaaatggggacagcggaaaaaggaaggattcacgttcgagtataga
tacctagaagatcgagagctctga
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