KEGG   Lytechinus variegatus (green sea urchin): 121422314
Entry
121422314         CDS       T11173                                 
Name
(RefSeq) intraflagellar transport protein 140 homolog isoform X1
  KO
K19672  intraflagellar transport protein 140
Organism
lvg  Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:lvg00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:lvg03037]
    121422314
Cilium and associated proteins [BR:lvg03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   121422314
SSDB
Motif
Pfam: TPR_IF140-IFT172 Beta-prop_IFT140_1st Beta-prop_IFT140_2nd TPR_IF140_C WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_Prp19 WDR55 Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 WD40 TPR_GEMI5 TPR_COPA_B EIF3I TPR_IFT80_172 Beta-prop_TEP1_2nd Clathrin WDR90_beta-prop_4th Beta-prop_NUP159_NUP214 PPR_2 Med9 Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 121422314
NCBI-ProteinID: XP_041473203
LinkDB
Position
10:complement(36345618..36381269)
AA seq 1465 aa
MAIFFDHRVQSGSTSHVDISWHNEQPLLAIAMRGQQGGGVINIFNEEGQALPAANLQRSC
YSTSLAWHPTHPSVAVGWESGEILIWNEQDQQLQEATKLHKAQVCLLQWSAKGQRLLSGD
KEGTLIMWKSDGKGHLTSNPISQLPSQQTPTQCLFPYGGPKQDDERSAPWSSNLYKGSSS
LIADGNACFVGGEEGHIVFMDDKGNMSQAVSVEGPVKKLLYNSHRNVMVVVTKSMALSQY
SVSQDGKLTEMMKVKLSGKPNDSDCDMVWAGKGLLATASGESLVRMWDLDKDDNYVLALD
KNIGFEMGENITCVAYSSKKGLLAGGTDKGRVAMWRYSPVPGVLGRRQEGETKWKLQVPC
NLEGQLGQIKWGSRRDLLATNSFSGVVILNEHIMSASMKDQVAVVQAGPSSISLDVFVNG
SHHDIKTDIHIKGICNTKDHVAVWNGKQAVVYEISQTIRATGTFSTDSKMVRIHEQNAYT
TEPGKIQVRTFQGTVKQLISMNENEGEPCTMEIMGNYLVVGTSGGFVKMYDVSRREAKPH
NTPKNLMDVIPGMGSILMAKTNCNGTKLAIIVSKSDGTTDPKLYVWDPDLDTLGFFDLKT
GHGDQEDEPLSKDDDITDAERGREEAAQDVAGRYPINIFWDTHEPKLLVCEAKLSHQEET
TTPKKTTSLLSTIVNTQPEMMVVSLFTTLEHGVVLQDSFGHVQGTLLGVEVPYFYFIKKA
GDGKTKKGVFPGEKMDDPGPISSSSLVARQVMRNFAGLEDGDKSARDAMMNFSYYLTIGN
MDEAFKAIKLIKSESVWENMAKMCVKTRRLDVARVCLGNMGHARGARALREAENEPELDA
RVAMLAVQLGLLDDAERLYKNCGRYDLLNAFYQASGQWGKAMETAELNDRIHLRTTYYHY
AKHLEAKGDINGAIPNYEKSDTHRFEVPRMLFDEPQALEAYIMKTKDRALRKWWAQYMES
TGEMETALQFYEAAQDYLSLVRVYCYCGNIDKAAEIANETGDRAACYHLARQHENQQDNI
KEAIHFFTRAQSYSQAIRLCKEHDMEDQLMNLALMSTKEDMIEAARYYENNRNTHDKAVM
LFHKGGHFSKALELAFESQQFGALQLISEDLDERTDPVLLNRCAQFFMEHGQYDKAVDLL
VVAGKYFEALELCQDHNVNITERLAEKMTLSKDDSQGDMRLKLLEKVADLCFLQGSYHLA
TKKYTQAGNKVKAMRALLKSGDTEKIIFFAGVSRQKEIYVMAANYLQSLDWRKDPEIMKN
IIGFYTKGRALDSLAGFYDACAQVEIDEYQNYDKALGALTEAYKCLSKAKVKNQTQIEEK
LGALKHRISLVKKFVQARRAYDEEPEESMRQCQVLLEETELDSAIRIGDVYGMMVEHYAR
QENYKKAYAFMEEMRSRIATVNMAYYINIRTIEAVHRALDIPLGRGTGAEKKGVVMGDDL
GQDEDDGEEVEEDVQEDYNEDEAYC
NT seq 4398 nt   +upstreamnt  +downstreamnt
atggctattttctttgatcatcgagttcagtcaggctcaactagccatgttgatatatca
tggcataatgaacaacctttacttgctattgcaatgagaggccagcaaggcggaggtgtc
atcaacattttcaatgaagagggtcaagcccttccagcagctaatcttcaacgttcttgc
tactccacctcattggcctggcatcctacccatccttcagtggctgtaggatgggagagt
ggagagatattaatctggaatgagcaagatcagcagcttcaggaagccaccaaacttcac
aaggctcaggtctgcttgcttcaatggagcgccaagggtcaacgtttattatcaggggat
aaggaaggaacattgatcatgtggaagagtgatggaaaaggtcatctgactagtaatcct
attagtcaattaccatctcaacagacaccaacccaatgtttatttccctatggtggacca
aaacaggatgatgaacggagtgccccatggagttcaaatttgtacaagggttcatccagt
ctaatagcggatggcaatgcttgctttgtaggaggagaggaaggtcacattgttttcatg
gatgacaagggcaacatgtcccaggctgtatctgtagaaggcccagtcaagaaattgctg
tataatagccatcggaatgtcatggtggttgtaactaagtcaatggctctatctcaatac
agtgtttcacaagatggaaagctgacagaaatgatgaaggtgaagttaagtggtaaacct
aatgatagtgactgtgacatggtttgggctggtaagggtcttctagcaacagcatctgga
gaatcattagtcaggatgtgggatcttgataaggatgataactatgttcttgctctggat
aagaatatcggctttgagatgggggaaaatatcacatgtgttgcgtactcttcaaaaaag
ggtttattggctggaggtacagacaagggtcgggtagctatgtggcgctactcacctgtt
cctggtgtcttagggcgtagacaggaaggagaaaccaaatggaaacttcaggtcccttgt
aacctagaaggtcaacttggtcagatcaaatggggttcaaggagggatctactagctact
aatagcttcagtggagtagttattctcaatgaacacatcatgagtgctagtatgaaagat
caggttgctgtagtccaagctggacctagttctatttctctagatgtctttgtgaatggc
tctcatcatgacattaagactgatatacatatcaaaggaatatgcaacactaaggaccat
gttgctgtatggaatggcaagcaagctgtagtctatgagattagtcaaaccatcagggca
acaggtactttctcaactgactctaagatggttcgtattcatgagcagaatgcatacact
acagaaccaggaaaaatacaagtcagaactttccagggcactgtaaagcaactcatctca
atgaatgagaatgaaggggagccctgtacaatggaaatcatgggtaattacctagttgtt
ggaacatcaggagggtttgtgaagatgtatgatgtatcaaggagggaagctaagccgcac
aatactcctaagaacctaatggatgttatacctggtatgggaagcattcttatggctaag
actaactgtaacggtacaaagcttgctatcatcgtctcaaagagtgatggtactactgac
cccaaactgtatgtatgggatcctgatctagacacgttaggtttctttgatctaaagaca
ggacatggtgatcaagaagatgaacctcttagtaaagatgatgatatcactgatgcagaa
aggggtcgtgaggaagcagcccaggatgtagctggtcgttatccaatcaatatcttctgg
gatacacatgaacctaagctgttggtttgtgaagcaaagctatcccatcaggaagagact
actacacctaagaaaactacatctctactgagtaccatcgtcaatacacagcctgagatg
atggtagtatctctgtttacaaccttggagcatggtgtggtcctacaggatagttttggt
catgtccaggggactttacttggtgtagaagtaccatacttctacttcatcaagaaggct
ggggatgggaaaacaaagaaaggagttttccctggtgagaagatggatgatcctggtcct
atttcatcatcatctctggttgctagacaagtgatgagaaactttgctggtttagaagac
ggtgataagagtgctagagatgctatgatgaactttagttattacctcactattggtaat
atggatgaagcattcaaagccattaaacttatcaagagtgagtcagtatgggagaacatg
gctaagatgtgtgtgaagactagaaggttggatgtagcccgtgtttgtcttggtaacatg
ggacatgctagaggagctagagctttaagagaagctgagaatgaaccagagcttgatgca
agggttgctatgcttgctgttcaacttgggctgttggatgatgctgagagactgtacaag
aactgtggacgttatgatcttcttaatgcattctaccaagccagtggacagtggggaaag
gccatggagactgccgaactgaatgatcgtattcatctaagaactacctactatcactac
gctaaacatctagaggcaaagggtgacatcaatggagctattccaaactatgagaaatca
gatacacatcgatttgaggttccaagaatgctgtttgatgagcctcaggctttagaagcg
tatattatgaagacaaaagacagagcattgaggaaatggtgggcccagtacatggagagt
acaggagagatggagacagctttacagttctatgaagcagctcaagattacctatcccta
gtcagggtttactgttactgtggtaatattgataaggctgctgagattgctaatgaaacg
ggtgatcgagcagcttgttatcatcttgctagacagcatgaaaatcaacaggataacatc
aaagaggccattcatttcttcactagagctcaatcatacagtcaggctattagattatgc
aaggaacatgacatggaagatcaactaatgaacctagctttgatgagtactaaggaagat
atgatagaagcagctcgttactatgaaaataaccgcaatactcatgataaagctgttatg
cttttccacaagggaggtcatttctctaaggcccttgagctagcctttgaaagccagcag
tttggtgccttacagctcatctcagaagatcttgatgaaagaactgatccagttcttctc
aatcgatgtgcacagttcttcatggaacatggacagtatgacaaggctgttgatttactt
gttgtagctggaaagtattttgaggcattagagctctgtcaggatcacaatgtgaatatc
acagaacgcttagctgagaagatgacattgtctaaagatgatagccagggtgatatgaga
ctcaaactattagagaaggtggctgatctatgtttcctacaaggatcatatcacctagca
accaagaaatatactcaggctggtaacaaggtcaaggctatgcgagcactcctgaaatcg
ggtgacactgaaaaaatcatcttctttgctggtgtgtcacgtcagaaagagatctatgtc
atggctgctaactatctccagtccttggactggaggaaagatcctgagatcatgaagaat
attattggtttctataccaaaggaagagccttagactcactggctggcttctatgatgct
tgtgcacaggttgagattgatgagtatcagaactatgacaaagctcttggagctttgaca
gaggcatataaatgtcttagtaaggctaaagtcaagaatcagacacagattgaagagaaa
ctaggagctcttaaacatcggatcagtcttgtcaagaagtttgtccaagcaagaagagcg
tatgatgaggagccagaagaatcaatgcgtcagtgtcaggtcttgcttgaagaaacagaa
ttagacagcgctattaggattggtgatgtgtatggcatgatggtagaacattatgctaga
caagagaattataagaaggcctatgcttttatggaggagatgcgatcaaggatagctact
gtcaacatggcctactacatcaacatccgcaccattgaggctgtacacagagcccttgac
atacctcttgggcgtggcacaggggcggagaagaagggtgtggtcatgggtgatgatctt
ggtcaggatgaggatgacggagaggaggtagaagaagatgttcaggaggattataatgag
gatgaggcttactgctga

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