KEGG   Lytechinus variegatus (green sea urchin): 121423093
Entry
121423093         CDS       T11173                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lvg  Lytechinus variegatus (green sea urchin)
Pathway
lvg03030  DNA replication
lvg03410  Base excision repair
lvg03420  Nucleotide excision repair
lvg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lvg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    121423093
   03410 Base excision repair
    121423093
   03420 Nucleotide excision repair
    121423093
   03430 Mismatch repair
    121423093
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lvg03032]
    121423093
   03400 DNA repair and recombination proteins [BR:lvg03400]
    121423093
Enzymes [BR:lvg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     121423093
    6.5.1.6  DNA ligase (ATP or NAD+)
     121423093
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     121423093
DNA replication proteins [BR:lvg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    121423093
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     121423093
DNA repair and recombination proteins [BR:lvg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     121423093
   NER (nucleotide excision repair)
    Other NER factors
     121423093
   MMR (mismatch excision repair)
    Other MMR factors
     121423093
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 121423093
NCBI-ProteinID: XP_041474312
LinkDB
Position
10:33250434..33299522
AA seq 947 aa
MPGQRSITSFFSSPKPKPSVPPDAVKENKTSDKKVRSPLHARNGSPPNEEPARKKARRIL
DSDSEEEENEDKKPVKMECDEEEQSRKEDVKEKKTDVEMTSPNVKAEPQMTSPSIKTEPQ
TPTSTKKDVPLRKTARKHMRKRDSPPKPVKEESKDHEEEKMEEENIKTEEKTTSKVKEEP
TSPTEKKKNEDESPSKKSPKPSKVKSPSSDKKSKKSKTETKKEKQVKKEEKPVKEEEKSV
ETKEEPMEKKESKKSTENDVKKEAEEPAKEKETKKTNTFTWGSSSKKSDDKSSGTSYRPG
SASYHPVESACWKKGESVPYKALADTFSIIEDTSGRLKTIEILSDFLTSVMLLTPDDVKM
CIYLCLNKLAPAYEGLELGIGETVLMKAIAQATGRSVDKLKVAAAEKGDLGLVAESSRST
QRTMFTPPRLTIKKVFSKLKDIANLSGNSSMSKKVDLIKGLLVACKDCEARYLIRSLGGK
LRIGLAEQSVLVALGHAAVLAKPESDEMILKSKVNTSEKVKKAMEEAALLVKTAYCEMPT
YDALIPALMAHGVTELPNHCRLTPSIPLKPMLAHPTKGVSEVLDRFQDTPFTCEYKYDGE
RAQIHLLESGKIHIYSRNQEDNTTKYPDIIARLSAAVDEKVTSCILDSEAVAWDPEKKQI
LPFQVLSTRKRKDADAGDIKVQVCVFAFDLLYLNGEPLVRKPLRERRSLLRDHFKEVEGE
FIFAKSMISSDTDDIAEFLEESVKGNCEGLMVKTLDKDATYEIARRSHNWLKLKKDYLDG
VGDTLDVVVIGGFQGRGKRVGCYGGFLLACYDEENEEFQSICKIGTGFKEEELEKHTKFF
KDHVIDKPRPYYNYDSSVAPDHWFDAVQVWEIKAADLSVSPVHKAAIGIVDPAKGISLRF
PRFIRIRDDKKPEEATGAAQVASMYNNQDQIKNQQANKSIKTEEDFY
NT seq 2844 nt   +upstreamnt  +downstreamnt
atgccaggtcaacgatcaataacctctttcttttcgtcacccaagccaaagccttcagta
cctcctgatgcagtcaaagagaataaaaccagtgacaaaaaggttcgttctccccttcat
gcaaggaacggatcacctccgaacgaggaaccagctcgtaagaaagctaggaggattctg
gacagcgatagtgaagaagaagaaaatgaagataagaaaccagtcaagatggaatgcgac
gaggaggaacagagcaggaaagaagacgtgaaagagaagaaaacagatgttgagatgact
tctccaaatgtcaaagcagaaccacagatgacttctccaagcatcaaaaccgaacctcag
actccaacgtccactaagaaggatgtccctctcagaaagacggctcgaaagcatatgagg
aagagagattcacctcctaaaccggtcaaagaagaatctaaagaccatgaagaagagaag
atggaggaagaaaacattaagactgaagagaagactacttcaaaggttaaagaggagcct
acatcaccaacagaaaagaaaaagaatgaagacgaatcaccttccaaaaaatcccccaaa
ccaagcaaagtaaaatcgcccagcagtgacaagaagtccaagaaatctaagactgaaaca
aagaaagaaaaacaagtaaagaaggaagaaaaacctgtgaaagaggaagaaaaatcagtg
gagacgaaagaagaaccaatggagaagaaagaatccaagaaatccactgagaatgatgtc
aaaaaagaagcggaagaaccagcaaaggagaaagaaaccaaaaagacaaatacattcaca
tggggcagcagcagtaaaaaatctgatgacaaaagctccggaactagttatagacccggt
tctgcatcctatcatcctgtggaaagtgcatgttggaaaaaaggagagagtgttccatac
aaggctctggcagacacattctccatcattgaagacacaagtggaagattgaagaccatt
gagatcttgtctgatttcttgacctctgtgatgctgttgacccccgatgacgtgaagatg
tgtatctacctatgtcttaataagttagcgcctgcttatgaaggtcttgagcttggtatc
ggtgagaccgtcctcatgaaggcaatcgcacaggccacagggcgatcggtagacaagctg
aaagttgctgctgcagaaaagggagatttaggactggtagcagagagcagtagaagtaca
caacgtaccatgttcacccctccaagactgaccatcaagaaagtcttctctaaactcaaa
gatattgccaaccttagtgggaattcaagtatgtcaaagaaagttgatctgattaaagga
ctgctagtggcctgtaaggattgtgaagctagatacctcatcagatcacttggagggaaa
ttgaggattggtctggcagagcagtccgttcttgtagccctaggtcatgctgctgtctta
gcaaagccagagtcagatgaaatgatccttaagagcaaagttaatacctcagagaaagtc
aagaaagcaatggaagaagcagctctcctcgtcaaaacagcatactgtgagatgccaact
tacgatgctctgattccagcgttgatggcccatggagtgacggagcttcccaatcactgt
cgtctgactccatcgattcctctcaaacctatgttagctcatcccaccaaaggagtatca
gaggtcctagatagattccaagatacgccttttacttgtgaatacaagtatgatggtgaa
cgggctcagattcatctgcttgagtctggtaagattcacatatacagcaggaaccaagaa
gacaacacaaccaaatatcctgatatcattgcaaggctctctgcagctgttgacgagaag
gtaacatcgtgtatcctggattcggaggcggttgcctgggatccagagaagaaacagatc
ttgccattccaggttttgagtacgaggaaaaggaaggatgctgatgccggagatattaag
gtccaagtctgcgtctttgctttcgatcttctttacctcaatggagaacccctggtgagg
aaacctctgagagaacgtagaagtctattgagagatcacttcaaggaagtagaaggagaa
ttcatctttgccaagtccatgatctcctccgatactgatgacattgctgaattcttagag
gaatctgtcaaaggaaactgtgaaggtctaatggtgaaaacattggacaaggatgcaacc
tatgagatagcaagacgatcacataattggctcaagctgaagaaagactacttggatgga
gttggagatactctggatgtggttgtgattggtggtttccaggggcgtggtaagagagtt
ggttgctatggaggtttcttactcgcatgctacgatgaagagaatgaagagtttcaatct
atctgtaagattggaactggcttcaaggaagaagagttggagaagcacacaaagttcttc
aaggatcatgtgattgataagccccgcccatattataactacgacagcagtgtagctcct
gatcattggtttgatgcggtacaagtatgggagatcaaagctgctgatctctcagtctca
cccgtacacaaggcagctataggaatagttgatccagcgaagggtatttctctacgattt
ccaagatttatccgtatccgtgacgacaaaaagccagaggaggcaacaggggcagctcag
gtggctagcatgtacaacaatcaggatcagatcaagaaccaacaagcaaataaatccatc
aaaacagaggaagatttctattaa

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