Lytechinus variegatus (green sea urchin): 121423229
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Entry
121423229 CDS
T11173
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lvg04040
]
121423229
Ion channels [BR:
lvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121423229
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
ANK_LRRK2
Ank_KRIT1
PKD_channel
DUF5104
Motif
Other DBs
NCBI-GeneID:
121423229
NCBI-ProteinID:
XP_041474483
LinkDB
All DBs
Position
10:23869605..23894121
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AA seq
1273 aa
AA seq
DB search
MWNQNHDDDKSTVNNGQSGDDDQDAGELSNPAFEMTSMSTSPGGPSLLPRLLNASDDDER
SVSTLMSASNKVRFSKHGLQLEPVEDESVCEKSSTSSNDMNELSSFHEKPRKVAFDLDTD
GQGKTPHDHEDELVIEPDHANFVNSKLSFLDTEVEKDEERNVKNGFLGNVKAKFPKKKRR
NKLGRVTSPILMSNLVDAVRRGDMENMKNLLTENSSFNLNKLDKSNLALLHYASIQDKDF
IARELLRRGADVDVLNLDIKATPLHAAARMNSVNVAHVLLARCADVDRKTSTGLTPLHIS
ARRGHEEITKILLTLGRADVHARDAENATALHAGAMSGNEAVCKLLVQHGADIRAKDVNS
MTPLMKAVVSGHVALVDMFLERAHQIGLSIEAYINDEDLDGNTCLHLAVSKRRSEVIQRL
FGYRMSPNLVKKNGMGPLHIAAINGSTGVALHLIQNGAEIDMKDDEGMTPLHRATFYNQV
ETMALLVHEGAMINEIDNIGFTPLLCAACKGHTPAGELLLSRGADIFAFDMHRKSPLHWA
AEMDHLGFVEFLLKNGGYRLLEITDIYEQTALHYAAEAGNVEMIKKLIQYEVKGEVRDMT
EKTPVHIAARAGYLSCVEELLHQTPLLLNDEDQDGMTPLLIACYHGHRDLVKKLLKIGAD
ITSVNDDHRTALMLASMNNHVETMSILIEHNCDIHALDKYKNSALHLSVDGGHIGPANLL
IRAGADQSASNNEGFTPLELAIDGDHGEIAAAIIKSRDWRIAMQSKDELMISPMKALIEK
LPDVALLVMDRCVHKTYTEQHVTSYDVKYEYQYIDPGPDDESTRANGYRYFAVRTMCQYG
REKLLAHELSQSVLKRKWNRFARVFFYIDLLFYVAFTACLTTHITLATVPPDEAYWDDVN
YALLKCPSYNLSLNPALKDTFFNGAGSNSLWYVNPAPFYTGYAILVYCISMIVGELAEMY
TLRLMYFTEMANLVDWATLSTAIWFVLPPGRAPCFHNWNAGIVAIFLSWMKLIMYLRSFK
TFGLYVLMFIETLKSLVKAMTVFIMFVIAFTFTFRMLFSTQYRFSTTDLAFMSTMTMMLG
EMNKDDIFNEENDLTPYAVTSYFCFLVFIFLMPMVLNNLTIGIAVGDIEGIRKKAFIKRN
SVQADYVYHLENKCPLWLQRFLYQSEYIIRVQKERYRNKFTSMFFPREDEALIELDDKSE
PRNAEHVLEELQRQKFTLASLKLMVRQQGDILQRLADKEGVASKVQDIKGLTELFDEQPT
EETDQTDPSSSIA
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaccaaaaccacgatgacgacaaatcgactgttaacaacgggcaatcaggcgat
gatgaccaagatgcaggcgagctctccaaccctgctttcgaaatgacatcgatgtcgact
tcacctggaggaccgtcattacttccaagactgttgaatgcctcggatgatgacgaaaga
tcagtgtcgactctgatgtcggcgtctaacaaagtacggttcagcaagcatggtcttcag
cttgaaccagtcgaagacgagagcgtctgcgaaaagagttcgacatcgtcgaacgacatg
aatgagctcagtagctttcatgagaagccacggaaagtcgctttcgatttggatactgat
ggccaagggaaaacacctcacgatcacgaagacgagttggttatcgaacctgatcatgcc
aatttcgtcaatagcaaattgtcgtttcttgacaccgaggtggagaaggatgaggagagg
aatgtaaagaatgggttccttggaaatgttaaggcgaagttcccgaagaagaagaggagg
aataagcttggacgggtgacgtcaccgatactcatgtccaacttggtcgatgctgtaaga
aggggtgacatggagaatatgaagaacctcttgactgaaaacagttcatttaatctgaat
aaactggataaaagtaacctagccctccttcactatgcttcgattcaagataaagatttc
atcgccagagaacttctacgacgaggtgcagacgtcgacgttctcaacctcgacatcaaa
gccacgccccttcacgctgctgcacggatgaacagcgtcaacgtcgcccacgtccttctc
gcacggtgtgccgacgtcgatcgaaagacctcgactggtctaacaccgcttcatatcagt
gctcgacgaggacatgaagagatcacgaaaatcttgttaacactagggagggctgatgta
catgccagagacgcggaaaatgccacagctcttcatgcaggtgcgatgagcgggaatgaa
gccgtatgtaaactattggtccaacatggagccgatatcagagcgaaggacgtaaatagt
atgacgccactaatgaaagctgttgtgagtggacatgtcgctttggtagatatgttcctt
gagagagcgcaccaaattggtcttagtatcgaagcatacatcaacgatgaagacctagat
ggcaatacgtgccttcatctcgctgtctccaagcgacgatcagaggttattcagcgttta
tttggctatcggatgagcccaaatctcgtcaagaagaacggcatgggcccccttcacata
gcagcgatcaacggatcgactggtgtagctttacatttgattcagaacggggctgaaatc
gacatgaaagatgacgaaggcatgacacctcttcatcgggcaacgttttacaaccaagtg
gagaccatggctctgttggtccacgaaggtgcaatgatcaatgaaattgataacattggt
tttacaccacttctctgcgctgcctgtaagggccatactccagccggggaattgctgctt
tcacgaggagctgatatcttcgcgtttgacatgcaccgcaagtctcccttacactgggcc
gccgagatggaccatctgggcttcgtcgagttcttgctcaaaaatggcggttatcggctg
ctagaaattacagacatctacgagcagacggctctacattacgcagcagaggcgggaaat
gtcgagatgatcaaaaagttgatccagtatgaggtcaagggtgaagtgagagacatgaca
gagaaaacaccggtccatatcgctgctcgagccggttatttatcttgtgttgaggagcta
ctccaccagacaccattgctcttaaatgacgaagaccaggatggaatgactccgttactt
atagcctgttaccatggacacagggatcttgtcaaaaaacttcttaagatcggggcagac
attacgagcgtaaatgacgatcataggacggccttaatgttagcatcaatgaataaccac
gtggaaactatgagtatactgatcgaacataactgcgatatacacgccttggacaaatat
aagaattccgctcttcacctgagcgtagatggtggccacatcggtccagccaaccttcta
atccgagccggagctgaccaatcagcatctaacaacgaaggtttcactcccctagagctg
gccattgacggtgaccatggagagattgctgctgctattatcaaaagtagagactggaga
atcgcgatgcagagtaaggacgaattgatgatctcgcccatgaaggcgctgatcgaaaag
cttcccgacgtcgccctcctcgtcatggaccgatgcgtccataagacatacacggaacaa
catgttacatcttatgacgtaaagtatgaataccaatacatcgaccctggaccagacgat
gaatcgacaagagctaatggatatcgatacttcgcagttaggacgatgtgtcagtacgga
cgggaaaaactgctagctcatgaattatctcagagtgttttgaagaggaaatggaatcgg
tttgcaagggtctttttctacatcgatctgctattctatgtggcatttacagcgtgctta
acaacacacattaccctagcaaccgtgccaccggatgaagcatattgggatgacgttaac
tatgcgttgttgaaatgtccgtcctataacctgtcactaaatcctgcactaaaggacact
ttctttaacggagctgggtccaattctctatggtacgttaaccccgcaccgttctatact
ggatacgccattctagtctactgcatttcaatgattgttggagaacttgctgaaatgtat
actcttcgtttaatgtacttcacggagatggctaatctggtagactgggccacactatca
accgccatttggtttgttttacctccgggtcgtgccccatgttttcataattggaatgct
ggtatcgtcgccattttcctgtcttggatgaagcttattatgtatttaagaagtttcaag
accttcgggctttacgttctaatgttcattgaaaccctcaaatctttggtgaaggctatg
acggttttcatcatgttcgtcattgcatttaccttcacatttagaatgctcttcagtaca
cagtaccgattttccaccacggatctggcatttatgagtacgatgacgatgatgctgggc
gagatgaataaagacgacatcttcaatgaggaaaacgacctgacaccatacgcagtgacg
tcatacttttgctttctagtcttcatcttcttgatgcccatggttctcaacaacctcacg
attggtattgctgttggagatattgaaggcatcagaaagaaggcattcatcaaaagaaat
tctgttcaggctgattacgtctatcatcttgagaacaagtgtccgctttggcttcagaga
tttctgtatcaatcagaatatatcatcagagttcagaaggaacggtatcggaacaaattt
acatcaatgttctttccacgtgaagacgaggcactcattgaactggatgacaagtcagaa
ccaagaaatgccgaacacgtgctggaagaattacagagacaaaagtttacgttggcatcg
ctgaaattaatggtgagacaacaaggtgatatccttcaaaggcttgctgataaagaggga
gtagcatctaaagtccaagatataaaaggtcttaccgagttattcgatgaacagcctacc
gaagaaacagaccagacggatccaagctcttcgatagcttag
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