Lytechinus variegatus (green sea urchin): 121423336
Help
Entry
121423336 CDS
T11173
Name
(RefSeq) transducin beta-like protein 3 isoform X1
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121423336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lvg03009
]
121423336
Ribosome biogenesis [BR:
lvg03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121423336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Utp13
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WD40_Gbeta
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_Aladin
NBCH_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_NUP159_NUP214
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
Nucleoporin_N
Beta-prop_ACSF4
Cytochrom_D1
Beta-prop_RSE1_2nd
Beta-prop_WDR19_2nd
Beta-prop_pof12
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
121423336
NCBI-ProteinID:
XP_041474623
LinkDB
All DBs
Position
10:36294109..36332355
Genome browser
AA seq
1026 aa
AA seq
DB search
MATTLKANFRVANKIESFYTGGKVHVASDGSCIFCSHGDEVKVLDAKTGKTTHSIKDEGA
DEVTCFAVTNDNEIIVVAYRNSLLKQWNWKDGTCTRTWQSLHRGPVVSMAFDSTSTLLAT
GSSDSTIKLWDIIRQYCTHNLRGSQGVVSLVQFHPDPDRLHLFSVSDDNHIRIWDLKTSS
CLCVLETHYGAVTSLSFSHDGNTMLSSGRDSVVVIWDLVKNQPKKTLPVFETLESVILLP
EDQDFPNITPKKEKNDLCFLTAGAKGIIKVWTSAGRCLYEQRGNPIVPLKKQTSDDQDQP
AIITSAMICEAIGCVAVVTYDHNIILFRLEDLKLEKQFVGYNEEILDLKLLGKNESHLAV
ASNSEQIRVFELSSGSCQILTGHTDIVMSLDVFQKGHMMVSSSKDNTVRIWSMHEDTSII
TCKAIGLGHTHSVGTIVASRLSSKFCVSGSEDCTLKVWRIPEQTPEEGNKEPAHMKVIFT
EKAHDKDINSVCLSPNDKLLATGSQDRVAKLWHMEKEVLLGSFRGHRRGIWCVQFSPTDQ
ALATSSADGSIKIWALSDFTCVKTFEGHDASVLKVIFLTRGMQLLSSGSDGLLKLWTIKT
NECVTTLDEHNDKVWSVTAGQSEEKIITAGADSNILIWEDVTQIELEEKAEKEEDQIIKE
QQLSNLMLSKKFTKALRLAITLDQPFKALGIIRTILEEPDGETQLSATITKLRPDQIESV
LRFAQTWNMNSKHCHFAHCVLGIILRSQDPDDLAELPGIKDILEGFLPYSERHFQRLSRM
LEQSMFVQYTWQVMRRASGVQEITDEVEATTSDGIGMKDFVLDKRGDITQENEDDDDEEE
EEDSSDGHDDEEEETMLDVEEKPVRVNKNSKQVVANTKFIETPMTRDFSDDEEEESAASL
RTTGSVKVSPDKDASDEEDEDEEEKENKSTRRRKSGKKEESRTNSLKKVQKRTFIKNQES
HDSDEEEVPSPVKRKTRHSTKEKASATPGRSSKRKSALKLVEDSGKSLKKSTPSPYNKRL
RNQSRK
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcgactactttaaaagcgaatttcagagtagcaaacaagattgaatcattttacacg
ggaggaaaagttcatgtagcatcagatggcagctgtatattttgttcccatggtgacgaa
gtaaaggtcctggatgcaaagacgggcaagacaactcacagcatcaaagatgagggtgct
gatgaagtgacctgttttgctgttaccaatgataatgagattattgtggttgcatacaga
aactctttactcaaacagtggaactggaaagatggaacttgtacaagaacttggcagtct
ttacacagaggtccggtggttagcatggcatttgacagtacatctacactcttagctaca
ggaagcagtgatagtaccatcaaactatgggatatcattcgtcagtactgtacccacaac
ctcaggggctctcagggtgttgttagtcttgtgcagttccatcctgaccctgatagatta
catctcttctctgtatcagatgacaatcatattagaatatgggatctaaaaacaagcagc
tgtctatgtgtattagagactcattatggtgcagtgaccagtctatcattctctcatgat
ggtaatacaatgttatcaagtggaagagatagtgtagtggtcatctgggatctggtcaag
aatcaaccaaaaaagactcttcccgtctttgagaccttggaatcagtgatcttactacca
gaggaccaggatttcccaaacattactccaaagaaagaaaagaatgatttgtgctttttg
acagcaggagctaaaggtatcataaaagtatggacatctgctggccgttgtctgtatgaa
caacgagggaaccctatagtacctttgaagaaacagacatcagatgaccaagaccaacca
gccatcatcaccagtgctatgatctgtgaggctataggatgtgttgccgtagtaacatat
gatcacaatatcatactcttcagattagaagatttaaaactagagaaacagtttgttggc
tataatgaagagatcctggaccttaaactactagggaagaatgaatctcatcttgcagtg
gctagcaatagtgagcagattagagtctttgaattgagttcaggaagctgtcaaatactc
acaggacatacagatattgtaatgtcattggatgtgtttcagaaagggcatatgatggtc
agtagttcaaaggataatacagtgcgtatatggagtatgcatgaagatactagcataata
acatgtaaagctataggtctaggccacacccattcagttggaacaatagtagcttcaaga
ctgtcatcaaagttctgtgtatctggaagtgaagactgtacattaaaggtatggagaata
ccagaacaaacaccagaagaagggaacaaggaaccggctcatatgaaagtcatcttcaca
gagaaggcacatgacaaggacatcaactcagtgtgcctatcaccaaatgataaactatta
gctacaggatctcaggatagagtagctaagctatggcatatggagaaggaagtacttctt
gggtcattcaggggtcataggagaggaatatggtgtgtgcagttttcacccacagatcag
gctttagcaaccagttcagctgatgggagtattaagatctgggccttatctgacttcact
tgtgtcaagacatttgaaggtcatgatgcatctgttttgaaagtgatattcctgactcgt
gggatgcaactcttatcaagtggatctgatggtcttctgaagctatggacgatcaagaca
aatgaatgtgtgacaacgttagatgaacataatgataaggtatggtcagtcactgcgggc
caatcagaagaaaagattataacagctggagcagattccaatatactcatatgggaggat
gtaacccagattgaacttgaagagaaagcagagaaagaggaagatcaaataatcaaggag
cagcaattatctaacctgatgctttctaagaagttcaccaaagctcttcgacttgcaatc
actctagatcagcctttcaaagccttaggtattatcagaactatactagaagagccagat
ggagagacccaactatcggctaccatcacaaaactcagacctgatcaaattgaatcagta
ttgaggtttgctcagacgtggaatatgaattctaaacattgtcacttcgctcattgtgtt
cttggtatcatcttaagatctcaagatcctgatgatctagcagagttacctggaataaag
gacatcctagaaggattcttaccatactcggagcgtcactttcagcgtctatctcggatg
ttagaacagagtatgtttgtacagtatacttggcaggttatgaggagagcttcaggggtg
caagagattacagatgaagtggaagctaccacatcagatggaataggaatgaaagacttt
gttttggacaaaagaggagatattacccaagagaatgaagatgatgatgatgaggaggag
gaggaggatagcagtgacggtcatgatgatgaggaggaagagaccatgttggatgttgag
gaaaagcctgtacgtgttaacaagaacagcaaacaggttgtggcaaataccaagttcata
gaaaccccaatgacaagagacttttctgatgacgaggaagaggagagtgctgcgtcctta
agaactaccggttctgtgaaggtttcaccggacaaagatgcatctgatgaagaagacgag
gatgaggaggagaaagaaaacaaatcaacacgaaggagaaagtcaggaaagaaggaagaa
tcaaggactaattctttgaagaaggtacagaaaaggactttcataaaaaatcaagagagc
catgacagtgatgaggaagaagtacctagcccagtgaaaaggaagactcggcattctaca
aaagaaaaggcttcagctacaccaggaagaagttctaagagaaaatcagctctcaaactc
gttgaagattcagggaaatcacttaaaaaatctacaccaagtccttacaacaaaagacta
cgaaatcaatcaagaaaatga
DBGET
integrated database retrieval system
