Lytechinus variegatus (green sea urchin): 121423424
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Entry
121423424 CDS
T11173
Name
(RefSeq) transitional endoplasmic reticulum ATPase-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04137
Mitophagy - animal
lvg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121423424
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121423424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121423424
03009 Ribosome biogenesis [BR:
lvg03009
]
121423424
04131 Membrane trafficking [BR:
lvg04131
]
121423424
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lvg04147
]
121423424
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121423424
Ribosome biogenesis [BR:
lvg03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121423424
Membrane trafficking [BR:
lvg04131
]
SNARE
SNARE associated proteins
Others
121423424
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121423424
Exosome [BR:
lvg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121423424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
nSTAND3
RNA_helicase
AAA_17
NPHP3_N
ATPase_2
Vps4_C
AAA_28
Mg_chelatase
Parvo_NS1
IstB_IS21
AAA_18
AAA_7
ABC_tran
ATPase
NB-ARC
AAA_24
NACHT
DUF815
TsaE
ResIII
Viral_helicase1
KAP_NTPase
Motif
Other DBs
NCBI-GeneID:
121423424
NCBI-ProteinID:
XP_041474693
LinkDB
All DBs
Position
11:19292990..19325007
Genome browser
AA seq
805 aa
AA seq
DB search
MAENSQEDIATAILRQKAKPNRLMVEEAINDDNSVVSLSQAKMDELQLFRGDTVLLKGKK
RRDTVCIVLSDETVSNDKIRLNRVVRSNLRVRLGDIASVHACPDVKYGKRIHVLPIDDTI
EGISGNLFDVYLKPYFQQAYRPVRKGDIFQVRKAHRAVEFKVVETDPGPYCIVSPDTVIH
FEGEAIKREDEEENLNEIGYDDIGGCRKQLACIKEMVELPLRHPALFRAIGVKPPRGILL
YGPPGVGKTLIARAVANETGAFFFLINGPEIMSKLAGDSESNLRKAFEEAEKNAPAIIFI
DELDSIAPKREKTHGEVERRIVSQLLTLMDGLKKRSHVVVMAATNRPNSIDTALRRFGRF
DREIDIGIPDSTGRLEILRIHTKNMKLSEDVDLEQIANETHGHVGSDLAALCSESALQQI
RKKMDLIDLEEDSIDAEVMDSLAVTMDDFRYALSKSSPSALRETVVEVPTVTWQDIGGLE
NVKRELQELVQYPVEHPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQANFISIK
GPELLTMWFGESEANVRDVFDKARQAAPCVLFFDELDSIAKSRGGNVGDAGGASDRVINQ
VLTEMDGMGSKKNVFIIGATNRPDIVDPAILRPGRLDQLIYIPLPDEASRISILQANLRK
SPVDKGVDLQYLAKVTQGFSGADLTEICQRACKLAIRESIEQEIRKQRERVANPDLDMET
DEEDPVPEITKLHFVEAMKFARRSVSDNDIRKYEMFSQTLQQSRGFGGNFRFPDAAGPTG
GQGTPGSGGANPNLYQDTEDDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaattctcaggaagatattgctacggcaatcttgaggcagaaagctaaacca
aatagactaatggtggaagaagcaatcaatgatgataactcagtcgtatcactctcacag
gcaaagatggacgagctacagctcttccgtggagacacagtcctgctgaaaggcaagaag
agacgagacacagtctgcattgtactctcagatgaaaccgtatcaaatgacaagatacgt
cttaatcgagtcgtcagaagtaacctccgggttcgccttggagatatcgccagtgtacat
gcctgcccagacgtgaaatatggcaaacgcattcacgtgctgcccatcgatgacactatt
gaaggcatttcaggaaacctctttgatgtgtacttgaagccgtacttccagcaggcttac
cgtccagtcaggaaaggtgacattttccaagtgcggaaagcacatagggcggtggagttc
aaagtggtcgaaaccgaccctggaccatactgcatcgtctcgccagatacagtcatacac
tttgaaggagaggcaatcaaacgagaggacgaggaggagaatctgaacgagatcggttat
gatgacattggaggatgccgtaaacagttagcttgtatcaaggagatggttgaattaccc
cttcgacaccctgctctctttagagccatcggagtcaagcctcctcgtggtatcctgtta
tacggaccccctggtgttggtaagacactgattgctagagccgtagccaatgaaacggga
gcgttcttcttcctcattaatggaccagaaatcatgagtaagctggctggagactccgag
tccaaccttcgtaaagcctttgaagaagcagaaaagaatgctcctgccatcatcttcatt
gatgaactagactccattgctcccaaaagagaaaagacccatggagaagttgaacgaagg
attgtgtcacaactcttgaccctcatggatggcttgaagaagaggtcgcatgtcgttgtc
atggcagccacaaacagacccaacagcattgacacagctctgcgtagatttggtcgattt
gatcgtgagatagatattggcattcctgactcaaccggccgtcttgagatcttacgaatt
cacaccaagaacatgaaactatcagaggatgtagatcttgaacagattgccaatgagacc
catggccacgtgggttccgacctggcagctctctgctcagaatctgccttgcaacagatc
cgtaagaagatggatctaatcgacctggaagaagacagcatcgatgctgaggtcatggat
tccctagctgtaactatggatgatttcaggtatgcacttagcaagagcagcccaagtgct
ctgcgtgagacagtggtggaggtacccactgtcacatggcaggacatcggaggtctggag
aatgtcaagcgtgagctccaggagcttgtccagtaccccgtagaacatccagacaagttc
ctcaagtttggaatgaccccaagccgcggagtgctcttctacggtccaccgggatgcggt
aagactctgcttgccaaggccatcgccaatgagtgccaggccaacttcatctccatcaag
ggtccagagcttctcaccatgtggtttggagagtcagaagccaatgtcagggatgtcttt
gacaaggcaaggcaagctgccccatgtgttctgttcttcgacgagttggattccattgcc
aagtctcgaggaggtaacgtgggcgatgctggtggtgcctcagaccgtgttatcaaccaa
gttctcaccgagatggatggtatgggctctaagaagaatgtcttcatcatcggcgcaacc
aacagaccagacattgtagaccctgctatcctgcgtccaggacgtcttgatcagctcatt
tatatcccattgccagatgaagcatcgaggatctccattctccaggctaacctcagaaaa
tcacctgttgataagggagttgacctgcagtaccttgctaaggtgacccagggattcagt
ggtgccgatctgacagagatctgccagcgtgcctgtaagctagccatccgtgaaagcatt
gagcaggagatcaggaagcagagggagcgtgttgcaaaccctgaccttgacatggagaca
gacgaagaggatccagtcccagagatcacaaagcttcactttgtggaagcaatgaagttt
gcccgtcgatccgtcagcgacaatgacatccgtaaatatgagatgttctcgcagacactg
cagcaaagcagaggatttggtggtaatttcagattccctgatgctgctgggccaacaggt
ggtcaaggtacaccagggtctgggggagctaatcctaatctctatcaagacactgaagat
gatgatctctacagttaa
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