Lytechinus variegatus (green sea urchin): 121423624
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Entry
121423624 CDS
T11173
Name
(RefSeq) exosome complex component MTR3-like
KO
K12587
exosome complex component MTR3
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121423624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121423624
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121423624
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
121423624
NCBI-ProteinID:
XP_041474951
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All DBs
Position
1:complement(76956303..76964114)
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AA seq
283 aa
AA seq
DB search
MPTDTKRIQGPDESQSTFLYKKRTDKLHQPLLEEGKRQDGRSPEEIRPIFLKAGVVSQAK
GSCYIEMKNTKVICAVYGPREVPRRDGFVINGQLRCEFKFATFASEVRQGHLTTSTEKDL
ALQVQQALEPAVCLHKIPKSQVDIFITVLENDGSVLSAAITCASVAVANAGIEMYDLVIG
SSVRQSGEKLLLDPTAFDEAADSTATDDPQAIITVGFLPSINQVSCLVQKGQLLSEESIK
ALQHCIETCQRIYPVVYECLKKSVKKLKTSVGSPSPVDEVPVS
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgccgactgacaccaagcgcattcaaggaccagatgagtcacaaagcacctttttatat
aagaaacggactgataaactgcatcaaccgcttctagaggaaggaaagcgacaagatgga
agatcacctgaagaaataagaccaatatttctcaaagctggggttgttagtcaagcgaaa
ggatcatgttatattgaaatgaagaacaccaaggtcatatgtgcagtgtatggaccaaga
gaggtaccaaggagagatgggtttgtcatcaatggtcagcttcggtgtgagtttaaattt
gctacctttgccagtgaagtgaggcaaggccatttaactacatccacagagaaggacctg
gcattacaggtgcagcaagccttggaaccagcagtttgcttgcacaagattcccaagtcc
caagtggatattttcatcacagtactcgaaaacgatggaagtgttctttcagcagccatt
acctgtgcatctgttgctgttgctaatgctggtattgagatgtatgatcttgtcatcggg
agttcagtgagacagtcaggagaaaaacttctgcttgatccaacagcatttgatgaagct
gctgactccacggctacagatgacccacaggctatcatcactgtcggattcctaccttct
atcaatcaagtctcatgtctggttcagaaaggacagctcctgagtgaagaatccatcaag
gcattgcagcattgtatagagacatgtcagcgtatctacccggttgtgtatgagtgcttg
aagaaatctgtcaagaaactgaagacatctgtagggtcaccttcccctgtagatgaagtt
cctgtgtcatga
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