Lytechinus variegatus (green sea urchin): 121423723
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Entry
121423723 CDS
T11173
Name
(RefSeq) E3 ubiquitin-protein ligase NRDP1-like
KO
K11981
E3 ubiquitin-protein ligase NRDP1 [EC:
2.3.2.27
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121423723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lvg04131
]
121423723
04121 Ubiquitin system [BR:
lvg04121
]
121423723
03029 Mitochondrial biogenesis [BR:
lvg03029
]
121423723
Enzymes [BR:
lvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121423723
Membrane trafficking [BR:
lvg04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121423723
Autophagy
Mitophagy
PINK1-Parkin associated proteins
121423723
Ubiquitin system [BR:
lvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121423723
Mitochondrial biogenesis [BR:
lvg03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
121423723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP8_interact
zf-C3HC4
zf-C3HC4_2
zf-RING_2
U-box
zf-rbx1
zf-RING_UBOX
zf-C3HC4_4
zf-Nse
zf-C3HC4_3
zf-RING_6
zf-RING_5
zf-ANAPC11
Sina_ZnF
zf-RING_10
HIP1_clath_bdg
Syntaphilin
TRAF3_RING
DUF7569
IBR_1
zf-TRAF_2
zf-TRAF
Lebercilin
Motif
Other DBs
NCBI-GeneID:
121423723
NCBI-ProteinID:
XP_041475097
LinkDB
All DBs
Position
1:77333242..77346544
Genome browser
AA seq
319 aa
AA seq
DB search
MGYEVARFVGEVDEELICPICSAVLEDPQQAPECEHAFCSTCIQEWLSRQQTCPVDRNHI
TSQQLKPVPRILRNLLARLQIHCDNEGFGCASVVRLDSLQQHLQECEHNPKRPIQCDKGC
GMVIPKDEVKDHNCVRELRLLVQNQSNKLGEQETELTEIRSQLSEHRREMQMLKEYIRAI
RISNPNTSPSVRAIEDEIENNEVVRWVNSMPLARVTRWGGMISTPDVVLQTVIKRSLLES
HCPAHIVAELMENAHERNWPPGLSTLETRQMNRHTYEQYVCRRIPSKQAVLVMACDNAHM
GEDFTLDPGLVMIFAHGIE
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggggtatgaggtggcccgctttgtcggtgaggtggatgaagaactcatctgtccaatc
tgtagtgcagtgcttgaagaccctcagcaggcaccagaatgtgaacatgctttttgttct
acctgcatccaagaatggttatctcgtcagcagacctgccctgtagaccgtaaccatata
acatctcagcagctcaaaccagtgcctcgtatcttgcgcaacctccttgcccgcctccag
attcactgtgacaacgaaggcttcggctgtgcctccgttgtccgtttagattccctgcag
cagcaccttcaagaatgcgagcacaaccccaagcgtcctatacagtgtgacaaaggatgt
ggtatggtcatccccaaggatgaggtcaaagaccacaattgcgtccgggagttgaggctc
ctggtacagaaccagtccaacaagcttggtgagcaggaaacggaattgacagagatccga
agccaactgtcggagcatcgtcgcgagatgcagatgttgaaggagtacatccgcgccata
cggatctccaacccaaacacaagcccttcggtccgcgcgatcgaggatgaaattgagaac
aatgaagtggtgcgatgggtgaactccatgccccttgctcgtgttacccgctggggcggg
atgatatcaacaccggacgttgttcttcagacagtcatcaagcgttccctccttgaaagt
cactgtccagctcatattgttgcagaactaatggagaatgcccatgagcgtaactggcca
ccagggcttagcacccttgagacacgtcagatgaatcgccacacctatgaacaatacgtc
tgtcgtaggataccaagtaagcaggcagtgcttgtgatggcatgtgacaatgctcatatg
ggagaagacttcacattggaccctggtttggtcatgatctttgcacatgggatagaatga
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integrated database retrieval system
