Lytechinus variegatus (green sea urchin): 121423813
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Entry
121423813 CDS
T11173
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121423813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121423813
03041 Spliceosome [BR:
lvg03041
]
121423813
03009 Ribosome biogenesis [BR:
lvg03009
]
121423813
03016 Transfer RNA biogenesis [BR:
lvg03016
]
121423813
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121423813
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121423813
Spliceosome [BR:
lvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121423813
Complex C
U4/U6.U5 tri-SnRNP related factors
121423813
Ribosome biogenesis [BR:
lvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
121423813
Transfer RNA biogenesis [BR:
lvg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121423813
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
ASTN_1_2_N
Motif
Other DBs
NCBI-GeneID:
121423813
NCBI-ProteinID:
XP_041475244
LinkDB
All DBs
Position
11:complement(5171138..5195004)
Genome browser
AA seq
1021 aa
AA seq
DB search
MEDAFGDDLFSVFDDGTSSKETINSKKKSSKGPETSDGSSNKRAAESSASSDPADAKRPK
VSLITEELNLSEILPQVKTHDVECLEGCTHEVAIPLEEEFKPLEPTTKKAAKEYPFILDP
FQKEAIKCLENNQSVLVSAHTSAGKTVCAEYAIAMSLRDKQRVIYTTPIKALSNQKYREL
FEEFQDVGLMTGDVTINPSASCLIMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRDKNR
GVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEYRPVPLQHYIFP
AGGDGLHLVVDEKGEFRQDNFNAAMQVLRDGGDAAKGDQRGRRGGTKGPSNIFKIVKMVM
ERSFQPVIVFSFSKKECEAYGLQVSKLDFNTQEEKTLVVEVFNNAMDCLSEEDKKLPQVE
NVLPLLKRGVGIHHSGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVIFTNAR
KFDGKDFRWITSGEYIQMSGRAGRRGLDDRGIVILMIDEKMSPGVGKDILQGQPNPLNSA
FHLTYNMVMNLLRVEGINPEYMLERSFFQFQSYTAIPELFEKLRKLEEEYNAMAIPQEDS
VESYYKIRQQLKKLAKDIQGFITKPKYCLPFMQPGRMVKVKNGDDAFGWGVVVNFRRKAN
QKMNNPSDDSPLYISEVLLNCSQESIKNAASESAKPPKEGEKGEMTVVPIMLHLISEISS
VRVYLPKDLRPPDNRQSVGKSIQEVQRRFPDGLPLLDPVEDMGIKDDALKKVVEKVEAFE
ERMYSHTLHSDPQLEKLYGLYEKKAQIADQIREAKRELKKARTVIQMDELKCRKRVIRRM
GFATPADVIETKGRVACEISSADELVLTEMIFNGLFNPLSAEECVTLMSCFVFEEKSKET
PKLTNQVATALRQLQDTARRIAKVSMEAKLDIDEEDYVMSFKSTLMEVVYAWASGASFSQ
ICKMTDTFEGSIIRCMRRLEELMKEMCHAAKAIGNTELENKFSEGIVKIKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgcgttcggggacgatcttttcagtgtttttgatgatggaacatcttccaaa
gagacaataaattcaaagaagaaatcgtcaaaaggacctgagacatcagatggctcttcc
aataagagagcagccgagagttcggcatcctctgacccagcggacgcaaagaggcccaaa
gtctcgctcattacagaagaactaaatttgtctgagatcctgccgcaggtgaagacccac
gatgtagaatgccttgaaggatgtacccatgaagtggctataccacttgaagaagaattc
aaaccactggaacccaccactaaaaaggctgctaaggagtacccattcattctagatccg
tttcagaaggaggctatcaaatgtcttgaaaacaaccaatctgtgttggtttcagctcac
acttcggcaggaaagacagtttgtgcagaatatgctatagccatgtcactgagagacaaa
cagagagtgatatataccactccaatcaaagctctcagcaatcagaagtacagagagctg
tttgaagagtttcaagatgttggtcttatgacaggggatgtgactatcaacccatctgcc
agttgcctcattatgacaacagaaattttacgtagcatgttatatcgaggatcagagatc
atgagggaagtcggttgggtcatctttgacgagattcattatatgagagacaagaatcga
ggtgtagtttgggaagagaccattatcctgcttcccgacaatgtccactatgtgttccta
tctgctaccattcctaatgctaaacagtttgcagaatggatctgtcatcttcacaaacag
ccatgccatgtagtgtacacagagtatcgtcctgtaccattgcagcattacatcttcccg
gccggaggggatggacttcatctggtggtcgatgaaaagggtgagtttcgtcaggataac
ttcaatgctgccatgcaggttctgcgagacggaggagatgcagccaagggtgaccagaga
gggcgtcgaggaggcactaaaggaccttcaaacatcttcaagattgtgaagatggtgatg
gagagaagctttcagccggtcatcgtcttcagcttcagcaagaaggaatgcgaggcttac
ggccttcaggtctccaagctggacttcaacacgcaggaggagaagactctggtggtggag
gtctttaacaacgcaatggactgtctttcagaagaggacaagaaacttcctcaggttgag
aacgtcttacccctcctgaagagaggagtcgggatacaccactccggtttgttacccatc
ctcaaggagaccattgagatactgttctctgaaggcctcatcaaggcgctctttgctacc
gagactttcgccatgggtctcaacatgcctgccaggacggtcatcttcaccaatgcacgc
aagtttgatggcaaggatttcagatggattacatccggtgagtacattcagatgagtggg
cgtgcaggaaggcgtggtttggatgacaggggtatcgtcatcctcatgattgatgagaag
atgagtcccggtgtcggcaaggacattctacagggtcagccgaacccactgaacagtgcc
ttccatctgacgtacaacatggtgatgaatctgctgagggtcgaaggcatcaaccctgaa
tacatgctggagagatcattctttcagttccagagctatacagccattccagaactcttt
gagaagcttcggaagctggaggaggagtataatgccatggcgataccccaggaggacagc
gtagagtcttattacaagatcagacaacagctgaagaagcttgccaaagacatccagggt
ttcatcacaaaaccaaaatactgtctcccctttatgcaaccaggcaggatggtgaaggtg
aagaatggggatgatgcctttggctggggtgtggtggtgaacttcaggaggaaagcaaac
cagaagatgaacaatcccagcgacgattcacccctctacatctcagaggtcctcctcaac
tgctctcaagagagcatcaagaatgctgcctcagaatctgccaagcctcccaaggaaggg
gagaaaggagagatgacggttgtacccataatgcttcacctgatcagtgagattagcagt
gtccgagtctacctacccaaagacttgaggccaccagacaatagacagagtgtaggcaaa
tcaatacaggaggtccagagaagatttcccgatggcctccctcttttggatcccgtggag
gacatgggtattaaagatgatgcactcaagaaagtggtagagaaagtggaagcttttgaa
gagaggatgtactcacatacactgcattctgacccacagttggagaagctttacggtctc
tatgagaagaaagcacagattgcagatcagataagagaagctaagcgagagctgaagaaa
gccaggactgtgattcagatggacgaactgaaatgtaggaagagagtaatcagaagaatg
ggttttgcaaccccggctgacgtcatcgagacaaagggacgtgtcgcttgtgagattagc
agtgccgatgaactggtgttaacagagatgattttcaatggtctgtttaacccactgagt
gccgaggagtgtgttacactcatgagctgctttgtatttgaagagaagagcaaggagacc
cccaaactcaccaatcaggttgctacagctctcagacaactccaggacactgctcgtagg
atagccaaggtcagcatggaagcaaagctggacattgatgaggaggactatgtcatgtcc
tttaagtccaccctgatggaggttgtctatgcctgggcgtcgggggcgtccttctctcag
atctgcaagatgacagatacctttgagggcagtataatccgatgtatgagacgtctggag
gagctcatgaaggagatgtgtcacgctgcgaaggctatcggaaacacagaactggaaaac
aagttttctgaaggaatcgtcaagatcaagcgtgacattgtctttgctgcgagtctctac
ttatag
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