Lytechinus variegatus (green sea urchin): 121423933
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Entry
121423933 CDS
T11173
Name
(RefSeq) oligoribonuclease, mitochondrial-like
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121423933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121423933
03009 Ribosome biogenesis [BR:
lvg03009
]
121423933
Messenger RNA biogenesis [BR:
lvg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
121423933
Ribosome biogenesis [BR:
lvg03009
]
Eukaryotic type
Pre-60S particles
RNases
121423933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
121423933
NCBI-ProteinID:
XP_041475415
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Position
11:33775495..33781060
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AA seq
252 aa
AA seq
DB search
MRCKLRTNYSLRVVVEVERSGTVHGSSPMILSRARLLNPLKLFNRSVIFSTDRGRAANMS
NDSHNRPRQKKNEELKSRLVWVDLEMTGLDLNTCHIIEMACLITDEDLNIVAEGPNIIIH
QPDEILDKMNDWCVQHHTASGLVDAVKASKVSLQQAEYEMLSFVREYTYPKLCPLAGNSI
HVDKTFLVKYMPQFMDHLHYRIVDVSTVKELCRRWYPKEFEAGYQKKASHRAMGDIKESL
EELCYYRRTIFK
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgcggtgtaagctccgtaccaattatagcttgagggttgttgtggaagtggagcgctcc
ggaactgtccatggatcttctccgatgattctttcaagggcaaggttactcaacccgtta
aaattgttcaaccggagtgttattttcagcaccgatagaggaagagcagcaaatatgagc
aacgacagccacaatcgaccgaggcaaaagaaaaatgaggagttaaaaagtcgtctggtg
tgggttgatttagaaatgactggactggatttgaacacttgtcacatcattgaaatggct
tgcttgataacagatgaagatctcaacatcgttgctgagggacccaatatcatcattcac
caacccgacgagatactagacaagatgaacgattggtgcgtgcagcatcacactgcttca
ggactggtggacgcggtcaaagccagcaaggtgtcccttcaacaggcagaatatgagatg
ctatcgttcgtcagggagtacacctaccctaagctctgtcctctagcagggaacagtatc
catgtcgacaagaccttcttggtcaagtacatgcctcaattcatggaccatttgcattat
aggatcgttgatgtcagcactgtcaaagagctttgcaggaggtggtatccaaaggaattt
gaagctggttatcaaaagaaggcatctcacagagccatgggggacatcaaggagagttta
gaagagctatgttattaccggagaaccatcttcaagtaa
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