Lytechinus variegatus (green sea urchin): 121423952
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Entry
121423952 CDS
T11173
Name
(RefSeq) general transcription factor IIF subunit 1-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121423952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121423952
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
121423952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
121423952
NCBI-ProteinID:
XP_041475436
LinkDB
All DBs
Position
11:complement(15625502..15651965)
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AA seq
535 aa
AA seq
DB search
MSHQPSTSSSSLSTPARPSTGDVKEFNFRFPLNQRKKYSVMQFNRNDNVDLSKWKQAKME
RENNKIHYKTDLDDLPKFGAGSEFGRERKEEARQKKYGIIAQKYKEEDQPWILKQGAADG
KTAKKYRGRKEGRINENSSYFILSQLADGTFEAYPVDSWYNFTAMQTYKTLNAEEAEEEF
GRRDKTMNYFSVMVQKKLRDSKEEEEIEEQSSKSKGSDLTLMEDDYFLSSGEENEDSDDD
GGGGGGKSKSKKKVKGKDKKTTKKRPKKKDVDSEAEEESDEGDFDGREFDYISEQSSDDD
EMELAKTDIKGLDQELQQLEEEEDDEEESKEDNKETKEGDKLNESKESKGKDSDESSSDS
SGSDSDIDEKNIQSAMLLQKKHGRKSNEKTPSKSGSGSHSRSQTPTVPDNSQTDTTLSDA
AMKLENKDVSSKKRLNPTDSPATKRPRTESPVPGSSSSSNKTASGHVPLTEEEVKRYLMK
RPMTTKDLLVKLNPKRTGLPKEQIETKLAEILGKLAPEKRKKDKKIYWFIREHSK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatcaaccgagtacatcttcatcatccttatcaacacctgctagacccagtaca
ggagatgtgaaggaattcaatttcagattccctctgaatcaacggaagaagtacagtgtg
atgcaattcaacagaaatgacaatgttgatctctccaaatggaagcaggctaagatggaa
cgagagaacaacaagatccactacaagacagacctcgatgacctcccaaagtttggggcc
gggagtgagtttggtcgtgagaggaaagaggaagcaaggcagaagaaatacggcatcatc
gcacagaagtacaaggaggaggatcagccatggattctcaaacagggagcagctgatgga
aaaacggctaaaaagtatcgtggaaggaaggagggaaggataaatgagaactctagttac
ttcatcctctctcagctggctgatggaacgtttgaggcgtaccctgttgactcctggtat
aacttcacagcgatgcagacgtataagacgctaaacgcagaggaagcagaggaggagttt
ggcaggagagacaaaacgatgaattatttctcggtgatggtgcagaagaaactcagggac
tcaaaggaggaagaagagatagaggaacagtcatctaaatcaaaaggctctgatcttacc
ctaatggaggatgattacttcttatcatctggggaagagaatgaggatagcgatgatgat
ggtggtggaggaggaggtaaatccaagtctaaaaagaaggtgaaaggcaaagataagaag
acgaccaagaagagacctaagaagaaagatgtagacagtgaagctgaggaagagagtgat
gaaggtgactttgatggcagggagtttgattatatctcagaacaatcaagtgatgatgat
gagatggaacttgccaaaacagacatcaaaggtttagatcaagaactccaacaattggaa
gaagaggaagatgatgaggaagaatcgaaagaagataacaaagaaaccaaagagggcgac
aaacttaacgaatcaaaagagagcaagggcaaagatagtgatgagagtagttctgacagc
tcaggttcggacagcgacatcgatgagaagaatatacaatctgcaatgcttcttcagaag
aaacatggtcgaaaatcaaatgaaaagacgccctctaagtcaggtagcgggagccacagt
agatcacagacgcctaccgtaccagacaattctcaaacagatactacgttatcagatgca
gctatgaaacttgaaaataaagatgtatcaagtaagaagagattgaaccccactgattca
cctgctactaagagaccaaggacggagagtcctgttcctggttcatcatcatcatcaaac
aagacagcatctggtcatgtgcccttgacagaggaagaggtaaaacgatacttaatgaag
agacctatgaccaccaaagacttactagtcaagctgaatcccaagaggactggacttcct
aaagaacaaatcgagaccaagctggctgagattttgggcaagcttgcaccagagaagagg
aaaaaggataaaaagatctactggtttatcagagaacattccaaatag
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