Lytechinus variegatus (green sea urchin): 121424008
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Entry
121424008 CDS
T11173
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A0-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121424008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121424008
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121424008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
RBD_DEAH11
GhoS
RRM_3
Motif
Other DBs
NCBI-GeneID:
121424008
NCBI-ProteinID:
XP_041475512
LinkDB
All DBs
Position
11:complement(30718303..30748388)
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AA seq
437 aa
AA seq
DB search
MCNRPLFANAVRFLALSYIVLYLQLNNPGIMGEEVGKIFVGGVERSTQPDTFRQYFEKYG
KLSDFILMMDKERGVNKGFGFVTFADPSCVEAVVSTKNHRLDGKELDCKRCKARGTETRQ
GPGDQQRKKKIFVGGISQQATKDDLFEVFSNFGTVEDVHIMIDNETLKHRGFGFVTFESE
EDVEKLVQMQHVELKGKSMEIKKAQPRNNPGQGRNFGGQGGGFQQRGGGGGNWNQGGGPG
YGGSNNYGGGNNQWNMGQPMGQFGGPQGGGYQQQRGGGGGGFGGPQQQQGFNNGYRQPQQ
QQGGYGQQQPQQAYGGKHSGGGDNYADQRSRNGAPNYGNYGGYQQPQQDPYGQQQQQQQP
QQQYQTQGSMGNYAQEASTYGPQRGNYNQQGYNQAGPQTQQQPPQQNYGQVEGGQDMYGS
NNYGKGNMGNQFHPYSR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaatcgacctcttttcgctaacgccgttcgtttccttgcgttgagctacattgtt
ctttatcttcaacttaataatcctggcataatgggcgaagaagttggtaaaatctttgtt
ggtggtgtggagcgctcaacacagccagatacgttccggcaatactttgagaagtatgga
aagctgagcgatttcatcttaatgatggacaaagaacgtggtgtgaacaagggctttggc
tttgtgacctttgccgatccaagctgcgtagaagccgttgtatctacgaaaaaccacagg
ctggatggaaaagagcttgattgtaaacgttgcaaagccagaggaactgagaccagacag
ggtcctggagatcagcaaaggaagaagaagatctttgttggaggtatttcacaacaagcc
accaaagatgatttatttgaggtgttcagcaactttggaacagttgaagatgtccacatc
atgatcgacaatgaaaccttgaagcacagaggcttcggatttgtgacgttcgaaagtgaa
gaagacgtagagaaattggtccaaatgcaacacgtggagctgaaggggaaatcgatggag
atcaagaaggcccaacctaggaacaatccaggacaaggtagaaactttggcggtcaaggt
ggtggtttccaacaacgtggtggcggtggcggtaactggaaccaaggaggcgggcctgga
tacggcggtagcaacaactacgggggcggcaacaaccagtggaacatgggccaacccatg
ggtcaattcggtggaccgcaaggtggtggataccagcagcaaaggggtggcggcggtggt
ggattcggtggtcctcaacagcagcaaggcttcaacaatggttacaggcaaccccagcag
caacaaggaggctatggccagcaacaaccacagcaggcttatggaggaaagcatagtggg
ggaggtgataattatgcagaccaaagatctcgcaatggtgcacccaactacggtaactac
ggaggataccaacaaccccagcaggacccatacggccaacaacaacagcagcagcagcct
cagcaacagtatcaaacccaaggatcaatgggaaactacgctcaagaagcttcaacatat
ggaccccagagaggaaactacaaccaacaagggtataaccaagcaggcccacagacacag
caacaaccaccacaacagaactatgggcaggtagagggtggacaagacatgtacggtagc
aacaactatggcaagggcaacatgggcaaccagttccatccatacagtcgataa
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