Lytechinus variegatus (green sea urchin): 121424099
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Entry
121424099 CDS
T11173
Name
(RefSeq) nucleoporin NDC1-like
KO
K14315
nucleoporin NDC1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121424099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121424099
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121424099
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
121424099
NCBI-ProteinID:
XP_041475629
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All DBs
Position
11:3151747..3171574
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AA seq
656 aa
AA seq
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MASSKDWYMKDVFNWRTGASIAWSMLLLPPAVGIYICLAHFSLLHPTTWLFGWLQTCFSL
HGISCIFIIFLCSLFAAISNAFSYIVVPYIHRNRLSIILSVTRPTRLLHAAGHALLGGIT
AWSTCKLVGGDYLALSTRCNGEERGLCLNERHLFLVLFGAFIGIVYSVSYYLNRHNLLTF
NIIQQVKFFQVKSNVAQLVLKNSVWSLRLCTYYYAFYYLCGCLFKSWFLTNLDLQELAVP
VDSIRGLLDIRLLWQAWLLGTVITHLWTFSLYLFKVFNTEVYEFPIETAFNTSEECTLHR
ALGQRNSPLVKYLAYQDLSILSEHSLARRKQIFTLSQPGGHPHNWTRISSECLQLLASLT
DRLIVHQEWAANGINREKRMKEEEEKKKTKKQSGTNAQRVSSSSSFYTAATSPGPHQRIA
TLSATTYGTPVDYPSPGYAMPRTPARHNASYNARTPGGDSVWVDSPASHTYVPSPRRPIH
EHHRGMSPQRASFQVLKRPFFVFLYPRIAVIRQLPLFRYFVDPFPEADNRLLFTETQLHI
WALEAFASLVAASYTEDLYGVVQKSLPDILTEMLALYNALEKLLKLPTLLTARDPRELKV
TRIGPAHPDDQLRNDLRTTIKTSLHRIGSTFNKHLKSVPLALEYRKQLDELMDYKI
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccagtaaagactggtacatgaaagatgtgtttaactggaggacaggggccagc
attgcctggtctatgctgttacttccacccgctgtaggaatttacatctgcttagcccac
ttctctttgcttcatcccaccacatggctcttcggatggttacagacttgtttttctcta
catgggataagctgcatattcatcatctttctctgttcattatttgctgcaattagtaat
gcattctcttatattgttgtcccctacatccatagaaatcggctgtccatcatcctgtca
gtcacacgtccgacacgcctcctccatgcagcaggccacgccctcctgggcgggatcacc
gcctggtccacctgtaagctagttggtggcgactatctggctctatccacacgatgtaac
ggggaggagaggggcctgtgcctcaacgagcgacatctatttcttgttctctttggggct
ttcattggtatcgtatacagtgtttcatattatctgaacagacataatctactcactttc
aacatcatacagcaggtgaagttcttccaagtgaagtccaatgtggcacaattagtcttg
aagaattctgtgtggtccctccgtttgtgtacatactactatgcattctactacctgtgt
ggttgcctgttcaaatcatggtttctcaccaatctggatctccaggagcttgcggtccct
gtggactccatcagaggtctcctggatatcaggctgctatggcaggcatggctcctagga
accgtcatcacccatctatggacattctctctttacctcttcaaagtctttaatacggag
gtgtatgagtttccaatagagacggctttcaacacaagtgaggagtgtacgcttcatcga
gccttgggccaacggaacagtcctctggtcaaatacttggcttatcaagacctcagcatt
ctctcagaacactcactagctaggaggaaacagatatttactcttagtcagccaggtggt
cacccgcacaactggacgaggatcagttctgaatgcctccagttgcttgcctcgctgacc
gataggttgattgtccaccaagagtgggcggcaaacggcatcaacagagagaagagaatg
aaggaagaggaagagaagaagaagacaaagaaacagagtggtacaaatgcacagagagtc
tccagcagtagctccttctatacagcagctacttcccctgggccccaccaacgtatcgcc
accctgtctgctaccacctacggtaccccggtcgactacccttcccctgggtacgccatg
cccaggaccccagcgcggcataatgccagctataatgcccgcacaccgggcggtgacagt
gtgtgggttgattcgcctgccagtcatacctacgtgccttcacctaggaggcctattcat
gaacaccatagaggtatgtcccctcaacgggcctcttttcaagtattaaagagacctttc
tttgtcttcctgtatcctcggattgcggtcatcaggcagctacctctcttccgctacttt
gtggaccctttccccgaggctgataatcgcttgttgttcaccgagacgcagctccacata
tgggctttagaagcctttgcatcattagttgcagcctcttacactgaagacttgtatgga
gtagtgcagaaaagtctgcctgacatactcactgaaatgcttgccttatataatgctcta
gaaaaactcttgaagcttccaacacttctgactgctcgtgacccccgtgaactcaaggtc
acgaggataggcccggctcaccctgatgatcagcttcgtaatgaccttagaaccaccatt
aagacatcattgcataggattgggtcaaccttcaataaacatctcaagagtgttccgctg
gcactagaatacaggaagcagctcgatgaattgatggattacaaaatatga
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