Lytechinus variegatus (green sea urchin): 121424497
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Entry
121424497 CDS
T11173
Name
(RefSeq) protein patched homolog 1-like isoform X1
KO
K11101
patched 2
Organism
lvg Lytechinus variegatus (green sea urchin)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Zn_Ribbon_TF
Motif
Other DBs
NCBI-GeneID:
121424497
NCBI-ProteinID:
XP_041476139
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All DBs
Position
11:complement(32432129..32503479)
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AA seq
1496 aa
AA seq
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MLVTGGGGACCAARMQRWRETCLTAPYSDKSADERERGQSYPLNDDTRLNEILTFPYNAA
TCEFTCKHCGRLWQETYVSRNMERWAVPATPDSEDGRLSTPGLPEDYVYEELLTRTSWCN
ADYAYKQVDRGKAQGNKAALWLRSKLQGFLFSLGCYLQIHSGKALFLGLVILGACAVGLK
LTKIETNVEKLWVQVGGRLEQELEYTEATLGTGWGATSQIIVQTPKKDGENILTQSALLQ
HVRSAVLATQVEVDMYGVTWSFKDVCFITEYPSFEDHLIDSIIENIIPCTIITPLDCFWE
GAKLLGPERPIQIPNYNKTLRWTTLDPLGLLEIFEGYEEYFSPEAFRDIIIRTGIGHAYQ
VKPCLNPLDQECPDMAPNKLSGEIPNIAAHLTGGCAGFASRYMQWPEELLIGGVSKNQNG
SVQSAEALQTIIQLRGEKDMYEAWKNNIKVSEVTWTDEKAKAILNEWQRKFTDIVRNSTI
TNTTQNVNALSSASLEDLLQDFSRTSVVRVAMGYAIMTMYATLTMMKLYDGVRSQGGLGL
FGVLLVAGSVAAGLGFCALIGIVFNASTTQVLPFLALGVGVDDMFLLAHTSTSIPSEIPL
RHKTGEILRRAGVSIILTSVNNICAFMAAAIIPIPALRSLAFQLVIVLTFNLLVMLLVFP
AILALDAERREEKRIDLLCCVQSQQAHRVIRVQPRPLCGGSDPYRESPLPNRFSRKSPRR
SSPNRTTDVTLHSTVQTITHAPTDGYSGQCVTEVIPTASTTTDRTTPLPPYDSAPPSTAA
SVASMRTLLKAQKMSFGDCLKKLRFWRWNFSEFARDCYAPFLQQTFVKVTVIVLFTCLLG
VSIYGVLIMEDGLEITDVVPRGTREEEFLTVQSQYFSFYNMYAVTQEDFDYASRQKQLYA
FHNAFSAIPEIIREADGSLPTFWLQMFRDWLLEMQEAFDLEKQRYSIKTDRWYSNATDKG
VIAYKMILQTGIPESPADINRYHTGRLVDENGVIYANGFYNYLTVWYNYDTISYTASSGN
LHPAPPSWTPVGKADLDVTIPKANPLNYTQLPFYLNNLNTTQKVVSVIKAIRNISDYYTS
EGLPNYPLGVPFTFWEQYIHLRFYLALSLVSLLGASFIIVALMLVNPWASLILVFVLGMI
TVELFGFMGLIGLKLSAIPAATLIVSVGIGVEFTLHTCYAFLTTIGNRERRVTFALEHTF
APVLDGAVSTLLGVVMLAGAEFDFIVSYFFYVFLALIILGVLNGLVLLPVLLSLFGPHGE
VQPVANANRLPSPTPPPTPPTERATRLRHCRWDSEPPAGSYPAAIVREDVCSNSEHIEIH
PPEVVVETSVHHPHLVTEMIHRTKGHANSPNSQRTRPQRTSSKYPHRQHHQHHHHPHHQY
PHHHHQHPHCSRQSFPFSTNNSSSSSSSSLNKDSPHLARHVTTVTATARVSIVHGNTCTV
GEERRYPRRGRRGEDTVFSESKERDVKLECIEGGEEEQRAKKTEDSGSDKIQDSTV
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgctagtgacaggtggaggcggggcctgctgcgctgcgagaatgcagcggtggagagaa
acttgcctcactgcaccgtacagtgataagtcggcagacgagagagagcgaggccaatcg
tacccgctcaacgacgatacccgtttgaatgagattcttacttttccgtacaacgctgca
acatgcgagtttacgtgtaaacattgtggacgactgtggcaggaaacctatgtatcccgt
aatatggagcgttgggcagtacctgccacaccggattctgaggacgggagattgtcgacg
cctggattaccggaggactatgtatatgaggaattgctaacaagaactagttggtgcaat
gcagactatgcctacaaacaagtggatcggggcaaggcacaggggaacaaggcggcattg
tggctccggagcaagctccaggggttcctcttctctctggggtgttacctgcaaatccac
agcggcaaggcactctttcttggactggttatattgggcgcatgtgccgttggactaaaa
ctcaccaagatagaaacaaatgtggaaaaactttgggtgcaagttggagggaggttagag
caggaattggagtacacagaagcaacattgggaacgggctggggtgcaacaagccaaata
atcgtgcaaacgccaaagaaagacggggaaaacatcctcacacaatcggccttactgcaa
catgttaggtcggccgttcttgcgacgcaagttgaagtcgacatgtatggagttacatgg
agttttaaagatgtatgtttcataacagagtatcctagctttgaagaccatttaatagat
agtattatagagaacattattccttgtacaataatcacgccattggattgcttctgggaa
ggagccaagttacttgggcctgaaaggcctattcaaataccaaattataacaaaacccta
agatggaccaccttggaccctcttgggcttcttgaaatttttgagggttacgaggagtac
ttctcaccggaagccttcagagatattattattagaacgggtattgggcatgcctatcaa
gtaaaaccttgtctaaatcctttagatcaggaatgtcctgacatggcacccaacaaatta
tcgggagagatcccgaatattgcagctcatttaacaggtggctgtgcgggttttgccagc
cgctacatgcagtggccggaagaactcttgattgggggagtctccaagaatcagaatggc
tcggtacagagtgctgaggcgttacaaaccattattcagctgagaggggaaaaagacatg
tacgaagcatggaaaaataacattaaggtcagtgaggtcacatggacggacgaaaaagcg
aaggctatccttaacgagtggcagagaaaatttactgatattgtgaggaatagcacaata
accaacacaactcagaacgtcaatgctctctcgtccgcctcgttagaggatctcctccaa
gacttctcaaggactagtgttgtgcgggttgctatgggttacgccattatgaccatgtac
gctacccttacgatgatgaagctttatgatggtgttcggtcccaaggaggacttggtctt
ttcggggtcctgctggtggcaggctcagtcgcggcaggactagggttctgcgcccttatt
ggcattgtattcaatgcatctacaactcaggttttaccatttttagctctaggagtcgga
gtggacgatatgtttctcctggcccacacatctacctcaataccctcagaaattccactt
cggcacaaaaccggtgagatcctgcgtcgagcaggagtcagtataatcctgacgtcagtc
aataatatctgtgccttcatggcagcagccatcattccaatcccagcgcttagatcactt
gccttccaacttgtcatagtattgacctttaatctcctggtcatgctgctagtcttccca
gcaatccttgccctggatgcagaaaggagagaagaaaagaggatagacctcctttgctgt
gtccaaagtcaacaagcacacagagtcatcagggtgcagcctcggcccctctgtggtggt
tcagacccctacagggagtcacctctcccgaatcgcttctcaaggaaatctcctcgacgc
tcatctcctaacaggaccacagacgtcaccctccattccactgtccaaaccatcacacat
gcacccacagacgggtacagcggtcagtgcgtcactgaggttataccaactgcttctacc
accaccgataggaccacgccccttcctccgtacgactcggcaccacccagcacggcagcg
tcggtagcatcgatgagaacgttgctcaaagcgcagaagatgtcgtttggggactgtctg
aagaagttacggttctggaggtggaatttctcagagtttgctcgggattgctacgctcct
tttctccagcaaacgtttgtcaaggtgacagtaatagtcctcttcacgtgtctcctcggt
gtcagcatctacggcgtcctgatcatggaagatggcttagagatcactgacgtcgtaccc
cgcggcaccagggaggaggagttcctcactgtccagagccagtacttcagcttttacaac
atgtacgccgtgacccaagaggactttgactatgcctctcgtcagaagcagctgtacgcc
ttccacaacgccttctctgccatcccggagatcatcagagaagccgatggtagtctacca
acgttctggctccagatgttcagggattggctcttagaaatgcaagaagcttttgacctg
gagaagcagaggtatagcatcaagacagaccgatggtactccaatgcaacggacaagggt
gtgatagcctacaagatgatccttcagaccggcattccggaatctcctgcagatatcaac
aggtatcatactggtagattggttgatgaaaatggtgtcatctatgccaatggtttctac
aactacctgacggtgtggtacaactatgataccatctcctacactgcatcttccggcaat
ctgcatcctgctccgccctcctggacaccagtcggcaaagctgatctcgatgtcacaatc
cccaaggccaacccactgaactacacccagcttccgttttacctcaacaatctgaacaca
acccaaaaagtcgtcagcgtcatcaaggccattcgcaacatctccgactactacacgagt
gagggcctgccgaactaccccctcggtgtgccgttcaccttctgggaacagtacatccac
cttcgcttctacctggccctctccctcgtcagcctcttgggggcgtccttcatcatcgta
gccctgatgcttgtcaacccctgggcatctctgatcttggtgtttgtgcttgggatgatc
acggtggagctgtttggtttcatggggttgataggtctaaagctcagtgcaataccagct
gctactctcattgtatccgtgggcatcggtgtcgaattcacccttcatacttgttatgcc
tttttgacaaccattggtaaccgagaaaggagggtcacattcgccttggaacatactttc
gcaccagtgctagatggcgctgtttcaacccttcttggtgttgttatgcttgctggagca
gagtttgacttcatcgtgagctacttcttttacgtttttctggcactcatcatcctgggg
gtattgaatggattagtcttgttaccagtccttctgtcattatttggaccacatggtgag
gttcaaccagtggccaatgccaaccggcttccctcccctaccccaccccctactcccccc
accgagcgggctacgaggttgaggcactgtaggtgggacagtgagccccctgctgggtcg
tatccagccgctattgtcagggaagacgtgtgtagcaactcagagcacatagagatacat
ccaccggaggttgtcgtggaaaccagtgttcatcatccgcatcttgttaccgagatgatt
catcgcacaaaaggccacgccaactcgcccaactctcagaggacgcgaccccagcggaca
tcgtccaagtacccccaccgacagcatcaccaacaccaccaccatcctcaccatcagtac
ccccaccaccaccaccaacacccccactgctcccgccagtcgttccccttctcaaccaac
aactcttcctcctcctcatcctcctcgttaaataaagactcgccccatctagcgagacac
gtcaccacggttacggcaaccgcccgggtgtcgatcgtccacgggaacacctgcactgtc
ggcgaggagcggaggtaccctaggagggggagacggggtgaggataccgttttctcagag
tccaaggagagggatgtgaagttggaatgcatagaggggggagaggaagagcagagggcc
aagaagacggaggatagtggtagcgataagatccaagactcaacggtttag
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