Lytechinus variegatus (green sea urchin): 121424875
Help
Entry
121424875 CDS
T11173
Name
(RefSeq) nuclear pore complex protein Nup107-like isoform X1
KO
K14301
nuclear pore complex protein Nup107
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121424875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121424875
03036 Chromosome and associated proteins [BR:
lvg03036
]
121424875
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121424875
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121424875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
PPR_3
DUF6847
Motif
Other DBs
NCBI-GeneID:
121424875
NCBI-ProteinID:
XP_041476651
LinkDB
All DBs
Position
12:10350859..10383859
Genome browser
AA seq
1008 aa
AA seq
DB search
MATLAAGKKNVRKKESAVRPPDRVSGSFVEPGDTTMADIWKYSQRPDTSFDPQTMNRSID
QRRDDRRQARHGDLSFSILDRSIEPREELRSNVLQNDRIRKSMGMLEQATGIQGTPAPGI
YPFNQSARTPGSEMKRRTYTPQKPPMTSEFDVSDTVGFTPARSFLTPSAKLSVSMGEPTR
NLQTSILSSPQYNDSVMDQTGMTMDMTRANLLLQEDPGQLATEGLFDEFLSAFKKHQSLT
DVFALVSEYERLCHEQVTMLDRLMTKTLPSQKSFSRTLQVLRLLTQEKATWRLIGSLYQD
RQMSAEDQDGVGITLDRIHTEHLSEREIVDSLFERDAIVRQHQIVVDWLESIAADQSAFS
YNKVQFYSHSVCWENTLHELQQRAVSGSATRESMVTSLDPDAPVRENKPLADLDKEDEIK
LLLNVFANIRAGRLEEAQRLCKESGQAWRAASLEGWRLYHDRNMNSVENSGELAPIEGNT
YRDIWKNVCWRMAEDERFHLYERAIYAVLSGNLRELLPACNLWEDCLWAYFKVLVDQEVE
REIRDQLRSDRALQPLPQGYYTKDLTPPKIFQELHAHPNQKVESQAKEKLHLIQKYIILG
DIDTLLEEMSEWLREINPRPSHHLVRFMAHLALTLRSLGLSTRDEICISVIEAYVKDLIS
EEKTELVAIYVAQLPPDLQVMWYAKFLEGIHAKEQRQYCLQLAEDAGLDVAAITKKVVET
LRFKEDEEPGADIIHTAALEAATSQEDRRKIEAIDWLVFDPSQRAEAVKQCNAIIRAFLA
TKKHDAAREVFKKLPEDSIDVILRNWRAMAGSVPPPVQDANAIREYLCIKAYLDALDAYN
DWFAHYHNKKPSPPSLPEDANFHDRVRYEHEHKEYEMELERWEQSVLALTKGVSDTMYNV
LLFVDGGWMVDQTFDDDEEEVDEVRVSQMQRLRELCLPRMCLLLHSVLHSTHQYKDCLIL
ADVVASEQHQLYKVFSKPELKQVLSRLRESSLQLLDQSLDALGYEIAS
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggcaacactcgcggcgggaaagaaaaatgtgcgaaagaaagaatcagctgttcgtcct
ccagaccgtgtttccggttcttttgttgagccaggtgataccacaatggcagatatttgg
aagtattctcagcgtcctgacacctcctttgatcctcaaacgatgaaccggtctattgat
cagagaagagatgacagacgccaagcaagacatggtgatctctcattcagcattcttgac
agatcaatagaaccaagagaagaactaaggagcaatgtattacagaacgatcgcatcaga
aaatctatgggaatgttggagcaagccactgggatacaggggactcctgcaccaggtatc
tatccattcaaccaatcagcaagaactcctgggagtgagatgaaaagaagaacatatact
cctcagaaaccacccatgacctcagagtttgatgtttcagatacggttggattcacacct
gcgagatcctttctcacaccttcagctaagctttccgtttccatgggtgagccgacacgc
aacctgcaaacctccatcctgtccagtccacagtataatgactcagtgatggatcaaacg
ggaatgaccatggatatgacaagagcgaatctcctattgcaagaagatccaggtcaacta
gcaactgaagggctgtttgatgaatttctaagtgccttcaagaaacatcaatccttgacc
gatgtcttcgccttggtgtccgagtatgagcgtctctgccatgaacaggtcactatgcta
gacagactcatgacaaaaacactacccagtcagaaaagcttttcacgcacgcttcaggta
ctccgtctcctgacccaggagaaagctacgtggcgtctgattggttcattgtatcaagac
cgacagatgtcagccgaagaccaagatggtgtcggtatcactctcgacagaatccatact
gagcatctcagcgaaagagaaattgtagactctttgtttgagagggacgccattgtcaga
cagcatcagattgtggtagattggttggaaagcatagcagcagatcagtctgcattctca
tacaacaaagtacagttctattcacattcagtgtgctgggaaaataccctccatgaattg
cagcagagggcagtctccggatcggcaacgagagagtcgatggtgacctcacttgaccct
gatgcccctgtccgagagaacaaaccattggctgaccttgacaaggaagatgagatcaag
ctgctactcaatgtctttgccaacatccgggctggaaggttggaggaggcccaaaggctg
tgcaaagaatctggtcaagcttggagggcggcgtcactagaggggtggaggttatatcat
gatcgcaatatgaactcagttgaaaactctggtgaacttgccccaatagaaggcaacaca
taccgggacatctggaagaatgtgtgctggagaatggcggaggatgagaggttccacctg
tatgagagggccatctatgccgtccttagtggaaacctgagagagctgctaccagcttgt
aacctttgggaggactgtctttgggcgtacttcaaggttctagtcgaccaggaagtggag
agagagatccgggaccaactgagatcagacagggcacttcaacctctgcctcagggctat
tatacaaaagacctcacaccgcccaagattttccaagaacttcatgcacatccaaatcaa
aaagtggaatctcaggccaaggagaagcttcaccttattcagaagtacatcatactgggt
gatattgacaccctccttgaagaaatgagtgaatggttaagagagattaaccctcgtcct
tctcatcatctggtccgtttcatggctcatctagctttaaccttgcgatctttaggactg
tcaactagagatgagatatgtatctctgtcattgaggcctatgtcaaggatctgatttcc
gaagagaagactgagctggttgctatatatgttgcacaacttccccctgatctccaggtc
atgtggtacgcaaagtttctggaaggtatccatgccaaggaacagaggcagtactgctta
caactagctgaagatgcagggttggatgtagcagcgatcaccaagaaggttgtagagact
ctgagatttaaagaagatgaggagccgggtgcagatatcatacacacggcggcactggaa
gcagcaacatctcaggaggatcgccgaaagattgaggccatagattggttagtgtttgat
ccgtcacagagagctgaagccgtcaaacaatgcaatgccatcatcagagctttcctcgcc
actaagaagcatgatgctgccagggaagtcttcaagaagcttccagaagactctattgat
gtgatcctcaggaattggagggccatggctggatctgttccacctcctgtgcaggatgct
aatgctatcagagaatatctctgcatcaaagcctatctggatgccttggatgcttacaat
gattggttcgctcactaccacaataagaagccaagtcctccttccctaccagaggatgct
aactttcatgacagagtacgctacgaacacgagcacaaagaatacgagatggaattagag
agatgggaacagagtgtactagcactcaccaagggtgtatccgataccatgtacaatgtg
cttctctttgtggacgggggatggatggtcgaccagactttcgatgacgatgaggaagaa
gttgatgaggttcgtgtaagtcagatgcagaggttacgagagctgtgcctgccgaggatg
tgccttctcctgcactccgttcttcattccacacaccagtacaaggattgcctgattctg
gctgacgttgtcgcatcggagcagcaccagctttataaggtgttcagcaagcctgaattg
aaacaagttctctcgcgtcttagggagtcgtcactgcaactcttagatcaaagtcttgat
gcgttaggttatgaaattgcatcatga
DBGET
integrated database retrieval system
