Lytechinus variegatus (green sea urchin): 121424986
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Entry
121424986 CDS
T11173
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121424986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121424986
03036 Chromosome and associated proteins [BR:
lvg03036
]
121424986
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121424986
Coactivators
SAGA/TFTC/STAGA complex
121424986
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121424986
STAGA complex
121424986
TFTC complex
121424986
SAGA complex
121424986
SLIK complex
121424986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_SPT8
WD_LRWD1
Beta-prop_ELP1_1st
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
Beta-prop_Vps41
WD40_like
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
eIF2A
PROPPIN
LisH
WDR54
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
121424986
NCBI-ProteinID:
XP_041476835
LinkDB
All DBs
Position
1:complement(81820003..81841003)
Genome browser
AA seq
678 aa
AA seq
DB search
MAEPMEESEQDLLCEKPANTNANEGNEESTGQQSMDSQTLSAVLQFLRKNNLKGTEELLR
KEANIQETSENASNTDQDVSSALSAYTSEGDPLLYEGQYRGLMSFIGSALDATKCELAQI
LYPVFVHMYLELVYNDHDNQAVAFFSGFSDEQESYHEEDLIKLSAVTKKDHMRHSEIMMN
FRTSKYVIRMSRDSYSALKRYLQDKQNNTVLNILEEHLYIDVFDGVPRNKQQIDSKAGSI
VGEAKREANKGKIYYGLLKEPDINIQIDEDDEGGEGEDKPKKKKPKKDPLASKKNKPDPN
APPQTRIPLPELKDADKLERLNAQRELSKRVHLGPDNLPSICFYTFLNAAQSRLISVDVS
NDSGLLAAGFSDSLIKVWTLTPQKLRKVKQAGALKEIDAESDDVLERIMDDSTATDQRVL
LGHSGPVYSTSFSPDRKFLLSSSEDTTIKLWSMYTYSSLVAYRGHNFPVWDVQFGPFGHY
FASGSKDRTARLWATEYHQPLRIFAGHLSDVDTVRFHPNSNYIATGSSDKTIRLWDMNTG
KCVRVMTGHKGPIHNIIFSPNGHYMASTGEDKRVLLWELRHGNLIRELNDHTAPIYSLSF
CQDGNVLASGGLDNCVKLWDVKKIFAETEPDELSSPPAIVTSSASNVLLGSYPTKSTSVF
NLHFTRRNLLLASGPFTS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacccatggaagaatcagagcaagatttactttgtgaaaaacctgctaatacc
aatgctaatgagggaaatgaggaatcgaccggtcagcaatcgatggatagtcagaccttg
tctgcagttttacagttcttgaggaaaaataacctgaaaggtactgaagagctgttgagg
aaagaagctaatatccaagagacctcagagaatgcttctaatactgaccaagatgtatca
tctgccctatcagcatatacaagtgagggtgacccgttgctgtatgaaggtcaatacaga
ggtctgatgtcattcataggatcagcgctggatgctactaagtgtgaactagcccagatc
ctttatcctgtgtttgttcacatgtacctagagcttgtctataatgatcatgataatcaa
gctgtcgcattcttcagtgggtttagtgatgaacaggaaagctaccatgaagaagatctt
atcaaactctctgctgtcactaagaaagatcacatgagacatagtgaaatcatgatgaat
ttcagaactagtaaatatgtgattcggatgtccagagattcctacagtgcactgaagcga
tatctacaagacaaacagaacaacacagtgttgaatattcttgaggaacatctctatatt
gatgtatttgatggagttcctaggaataagcagcagattgattctaaggctgggagtatt
gttggagaagcaaagagagaagctaataaaggcaagatctactacggtctgttgaaggag
cctgatattaacattcagattgatgaagatgatgaaggcggtgaaggagaagataagcca
aagaaaaagaagcccaagaaggatcccctagcatccaagaagaacaaaccagatcccaac
gcccctcctcaaaccagaataccacttccagaattgaaagatgctgacaaactagagaga
ttgaatgcacagagggagctgtcaaaacgagttcatctcgggccagataacttgccatcc
atctgcttctatacattcctcaatgctgcacaaagtcgattgatctctgtggatgtgagc
aatgattcaggtctgctagcagcgggtttctcagattctctcatcaaagtatggacatta
acacctcagaagctaaggaaagtcaaacaagctggagcattgaaagagatagatgctgaa
tctgatgatgtcttggagagaatcatggatgacagcactgctactgatcagagagtcctg
ttgggacatagtggacctgtgtattccaccagcttcagccctgataggaagtttctcctc
tcttcatctgaagacaccaccatcaagctttggagcatgtacacctactctagtctggtt
gcttaccggggacataacttccctgtctgggatgtacagtttggaccgtttggtcattac
tttgcttcagggagtaaggatagaacagccagactgtgggctacagagtatcaccaacct
ctcaggatatttgctggacatctttcagatgtagatactgtgaggtttcatcccaactcc
aactacattgctactgggtctagtgataagactatcaggctgtgggacatgaacacgggg
aaatgtgttagagtcatgacaggacataagggtccaatccacaatatcattttctcaccc
aacggtcactacatggcatcaacgggagaagacaagagagtgttactatgggaactacgc
catggcaacctcatcagagaacttaacgatcacacagcaccaatctactcacttagcttc
tgtcaagatggcaatgttttagcctcgggtggtcttgataactgtgtcaagctgtgggat
gtcaagaaaatctttgctgagacggaacctgacgagttgagttcaccacctgctattgtt
acatctagtgcttcaaatgttctactaggctcttaccctaccaaatccacttccgttttc
aatctacacttcactcgtcggaatctccttcttgcatcgggaccgttcacatcatag
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