KEGG   Lytechinus variegatus (green sea urchin): 121425536
Entry
121425536         CDS       T11173                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
lvg  Lytechinus variegatus (green sea urchin)
Pathway
lvg03013  Nucleocytoplasmic transport
lvg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121425536
  09122 Translation
   03013 Nucleocytoplasmic transport
    121425536
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lvg03019]
    121425536
   03041 Spliceosome [BR:lvg03041]
    121425536
Messenger RNA biogenesis [BR:lvg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     121425536
Spliceosome [BR:lvg03041]
 Complex C
  Other components
   EJC/TREX
    121425536
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    121425536
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 ANAPC4_WD40 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_Vps41 Beta-prop_IFT140_1st eIF2A Beta-prop_HPS5 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N NBCH_WD40 B-prop_COPA_B_2nd RMC1_N Beta-prop_EIPR1 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_DCAF12 Cytochrom_D1 Beta-prop_ELP1_1st WD40_like PROPPIN Beta-prop_NUP159_NUP214 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 121425536
NCBI-ProteinID: XP_041477549
LinkDB
Position
12:complement(7845630..7860286)
AA seq 321 aa
MAASTENMIKKHFEKNCRTKEHNGVHSSKVHSVAWNCDGTMLASGSFDRNVCVFSLDRDR
MTREATYKGHVGSVDQLCWHPRNPDVFVTASGDKTIRIWDTRSAKSISTIATKGENINIC
WSPNEQYIAVGNKDDLVTFVDARSNRIISEEQFKYEVNEISWNNDSDLFFLTNGHGHINI
LSFPDLKPLQELSAHPANCICIEFDPTGRYFATGSADALVSLWDVPELVCVRTFSRLDWP
VRALSFSHDGQLLASASEDLIIDVAHVETGEKVTEVHCESPTFTVAWHPKRYLLAFACDD
KDKYNRERDAGSIKLFGLPSD
NT seq 966 nt   +upstreamnt  +downstreamnt
atggcagcttccacagaaaacatgattaaaaaacatttcgagaaaaattgtcgaacaaaa
gaacataatggggttcactcatcgaaagttcactctgtagcatggaattgtgatggcact
atgcttgcatccggatcgtttgatagaaatgtttgtgtcttttcgctggatagagatagg
atgaccagagaagcaacatacaagggtcatgtcggcagtgtggatcagctgtgctggcat
cccagaaacccagatgtgtttgtgaccgcatcgggagacaagacgatcaggatatgggat
accaggtctgccaagtctatatcaactatagctacaaagggtgagaacatcaacatctgc
tggagtcctaacgagcagtacattgccgtcggcaacaaggatgacctggtgacctttgta
gatgctagatctaatcgtatcatcagcgaggaacaattcaagtacgaagtgaatgagatc
tcttggaacaacgacagtgatctcttcttcttaacaaatggtcatggtcacatcaacatc
ctaagctttccagacctgaaacctctgcaggaactcagtgcccacccagctaactgcata
tgcattgagtttgatccaaccggaaggtactttgccacaggaagtgccgatgccctggtg
agcctttgggatgttcccgagctggtttgtgtcaggaccttctcaaggttagactggcct
gtacgtgccttgagcttcagccatgatgggcagctcttggcatctgcctctgaagatctc
atcatagatgtggctcatgtcgaaacaggtgaaaaggtaacggaagtccactgcgaatcg
ccgaccttcaccgtagcctggcaccccaagaggtacctgcttgcattcgcctgtgacgac
aaggacaagtataacagagagagggatgcaggcagcatcaaactgtttggattacccagc
gattga

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