Lytechinus variegatus (green sea urchin): 121425579
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Entry
121425579 CDS
T11173
Name
(RefSeq) huntingtin-like isoform X1
KO
K04533
huntingtin
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121425579
04131 Membrane trafficking [BR:
lvg04131
]
121425579
03029 Mitochondrial biogenesis [BR:
lvg03029
]
121425579
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121425579
Membrane trafficking [BR:
lvg04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
121425579
Mitochondrial biogenesis [BR:
lvg03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
121425579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_N-HEAT
Htt_C-HEAT
Htt_bridge
Htt_N-HEAT_1
GNC1_N
Motif
Other DBs
NCBI-GeneID:
121425579
NCBI-ProteinID:
XP_041477605
LinkDB
All DBs
Position
12:complement(10452886..10509847)
Genome browser
AA seq
3050 aa
AA seq
DB search
MNRAVSVSNMEKLARSFEALKNHQQSSTSVDDTTSTGKDAKKKDVTLTKKDYIANLTVIA
EGISTANFRTLGEFPKFLGIAMEIFLTSCNDNESDIRLKADECLNKVIKACMESSLGRLQ
LELYKEIKKNGPSRSLRAALWRFAEMAHLIRPQKCRPYVINLLPSIARISRRPEDIVQEA
LMNFLIKTLPVLGSFLTDTEVKNLMKVLFPNLKHTSATTRRTAARCIVLICQYGRKPALY
FSWLVQALLMFVIPVKESFPVQIHLGVLLCLRYTVPHLVIQRSKEQGLKGSFGVTKKEEE
TGVKDEQLVKIYEYLIHCTKHADHNVLTATLDALQQLLKDPPKPLLDILMSKKGIARVSI
YEDKEKASPKHGEGPTATATEAEEGSTFTSDSGLDEDQYSTSAPSETSSSGLATTPTSTP
YSSTSLESIPSSLYSATRSDRTSRDLSAFGDQSSASLADLEPENSELIVDDGTSDYSNMA
IGGEEDNVGDVGRIGGGMENGGEAIEQAVEANDYAATTPSSDEILDSPGDTDDISPIRER
TATIDEGSPDVEVKFRAGDIGSYTDEDLPLRHLLRLLSSSFLLTGYQGSLIPDRKARVSV
KVLAMGCASHIIGMYPRVFFDHLFKGTEQGVKVEDEQYIRDLLLYVGHSDPQLRGQTLML
IGQLLHASLIESNYQYTDWCWQICGETNTDPVSIEYLVSLLSSAVSDDSSVTARSICQAS
KLCLQELCRSCHGSLGLTLTYDLLKLTSTTYWLVQVELLELISGFDFKLLHYLESRKVEE
LRRGYTFMREDIQRVVLEEVVFKLLGSEDGRVRTAAGDALSKLVPKLFYPVDQPHQESIS
SLAKTQVTRYLDPVMRDLQPYTPAITSTMDNLPVFHSKAPEGGCTFSESAFSRMVAVLFD
VMSNTMSRYSTYGCVRALARLSGSFPVTVHPSAWGCSQNLSSLSRSHEGSHPKLQRQSSL
TYKGGSGTSIGSTGCGASAEELAGGTGCGSLPVVVSLLTSSVGMLDLAAQHDMLQLATNL
LLGAAANSLKGSSSKKNASPATSPSQEAEGSGETWQCLNNRLLVPIVEQVLLHVTRLVSI
FSHVIDNHQPGPAKSQTALPSLPAGPSLSPIKRKSKIGRDKDTPDQSPATPQNPNKPTPD
KSDASEEKKSTKSTYGSFYQHAHYMRLYEVLRGAYKNYKATLELTKPDKFCLLLKMSLSC
LSQLLELASITEVGHYVEEILGYLKSCVTIEPTMTILCVEQLLKALFFTNMASTQELSSP
HHARKTGKAARLTSNMKPGLYHDCFIAPYTQYTQCLASMGPKLTTTPDAENESIGVFGWI
KTRADRRASLSSKSSKDKTAVQNYIRLFEPLVIRALKQYTVSSCVVLQQQVLHLLAQLVQ
LRVNYCLLDSDQIFLNFVIKQFEYLEEGLVKGYEVLIPHIFNFLVLLSYERFHSKPVIAM
PKIIQLCDGIMASGQQASTHIVPALKPLVHDLFILRANNKSESAKELDTQREVVVSMLLR
LIHYSQVLEMFTAVLQQAHRENEEKWKRLSRQVVDMILPLLARQQINLDTPAALDVLHHL
LGTVAPSSLRPVDILLKALLLVPYDQVSVVSMQRWLAMALALLGVLTTQSKEETILSRLQ
ELGLTSDLFICVLDAQHTKEDALNANMTPPEEVLARFLLQIVGFTVTTVQGFRSSKSIDG
SGDQSHDFLAQELSRLLLSMTHMFKSGTFRKVGVMMASLIARPQQSKCWFALDSLNEAFH
SLIQTDPILVLQWCQLLLLLNFDSTDWWMRILHTPKRPPLSKSLSSGSLDHLETNLETEL
STAEEVVKQGALVLFCDYVCENEADAEPLTWLVVNHVNDIVQLSYELPVQDLVSAIHRNS
AASGLFLRAINIRFNHMNNPCLVRQTLRLLEGIHLTQSGMLLTLLIEKFLTTHWQSIARV
ASGLACRRVEMLLAERVDQHTRAQLTHEELTKLEGFLTSNRLAQKNQRLMSLLSRLKLDL
TVEEPAPSPPDLPSDLPKNLADVFLDKEWYVSIVQSCCCGTSPSSSSRDCATMLSRLSYE
DIMAILTLEGFDHTLIGECISLGLARTQLGAPEHAQSPSSAQPPNATPTSTTPSSSNEHP
LQATPVDALLKAAMPTLVTHLKSFAALVPRPHRILEPGSERQDARDYCAKMMECFQDGVW
CHQLNDIVAALARYFLACRTLKIDLDIEASECMMSLTIASLELVSWSISEGKPISSAQAL
HSMECIAEILQHPELSTVIGDPDHVTWFCSAIGCIYHIIQAGKVWKEEHEPFTVPKLQEM
PGLDLRFDHQLQACHRISELVELLNENTFPKEQEAFLTKTPQFLREPMKSVMVGLARLPS
VNGFARTPPILWKMGWCPSPLERAQTNLPPIPLEFLKEKAVLRSFIQRVNSIGWTSRFQF
EETWASLLGLLNPADNPEDVMVEEEMEQNELMCLAIRGITSLLLNTILRPSAGNPTNSRP
LCIPRHDSLPFLATKKGQRLGRLRVLVEREMLAMQSTRSQKTLVPATSTAMEGPFDEMLT
ANMETEGNQDEFTLGQVSVHGIWAINNMILPLVEDQNQNRPEGSIIPLGRTAIPASLSRV
PSNLDVHSCLVLLLEVYGQWLAPGSARRTSLMLLCETIKSVLLISDIFTERSQFEWMYET
LLELNKIHPVEDELVTQYVIPGICKAASVLGMDKDVSEKVSKLLEVTLRSTHLPSRVGAL
YGVLYILESDAVEDIQVFVPMVTDYITRNIKAISNCSSSACQKHVLVMLSVAFYIMEYYS
DLTAGSDFTKAILQQCVVMVLMSDESTSWLVYHAIMVGFERLLVAHALGSQERDMLKKLS
VDRLCLPSPMHALSALGLLLTSMYTAEDGRGVSSDDDDIHHEMQPQDPEEVLLAMERVSI
MFDRIRKGYPSEAKAVAFILPPFLNDFFPPQDIMNKVIGEFLSNQQPHPQLMATVVFKVF
GNLHRNGQTQSVRDWVMLSLSNFTQRTPVAMAIWSLTCFFISASTNKWLRALLSHVINRM
GKLEPVDRKYFILAAKDFYNTQVIDEASRRAFTATFQAVSNTDAAYALLA
NT seq
9153 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgagcggtcagtgtatcaaacatggagaagctggccagatcctttgaggccttg
aaaaatcaccagcagagctcgacatcagtcgacgatacgacgagcactggcaaagatgca
aagaaaaaagatgtaacactaaccaagaaggattacattgcaaacctgactgtcattgca
gaagggatttccactgctaatttcagaactctcggagagttccccaaatttcttgggatt
gctatggagatatttctgacatcatgtaatgataatgaatcagatatcagactgaaagca
gatgagtgtctcaacaaagtcataaaggcttgcatggaaagcagtttaggtcggctgcag
ttagagctgtacaaagaaattaagaagaatggaccttctcgaagtcttcgtgcagcccta
tggcgatttgcagagatggcccacctgatccggccacagaaatgcagaccctatgtcatc
aatctcctaccaagtattgctaggatatcaaggagacctgaagatattgttcaggaggcc
ttgatgaatttcctcatcaaaactcttccagtccttggatctttcctcacggacactgaa
gtcaagaacctgatgaaggtattgtttccaaacctcaagcatacgtcagccactacaaga
agaacagcagcaaggtgtattgtacttatctgtcaatacggtcgcaaaccagctctctac
ttctcgtggcttgtgcaagctctcctcatgtttgtaataccagtgaaggagagttttcca
gttcagatccacctgggtgtcctgctgtgcttgcgttacaccgttcctcatctggtcatc
cagaggtcgaaggaacaagggttgaagggcagctttggggtcaccaagaaggaagaagag
acaggggtcaaagatgaacaacttgtaaagatttatgaatacttgatccactgtaccaaa
catgctgaccacaatgtcctaactgcaacactagatgcccttcagcaactcttgaaggac
ccacccaaacctttgctggacatcctaatgtccaagaaagggattgcaagggtcagcatc
tatgaggacaaggagaaagcatcacccaagcatggagaaggacctactgcaacagctaca
gaagcagaagaaggtagcactttcacatccgactcgggactcgatgaagaccagtactct
acatcagcaccgtcagagacctcatcttctggtctcgccaccacacccacctccaccccg
tattcctccaccagtctagaatccatcccctcctctctctactccgccactcggtcagac
cgcacctctagggatctctccgcttttggtgaccaaagcagcgccagtcttgccgatctg
gaacctgagaactcggagctcatcgtagacgatggaacgtcggattattcgaacatggca
atcggtggtgaggaggacaacgtgggtgatgtcggcaggatagggggtgggatggagaat
ggtggagaagccatagagcaagcggttgaagcaaatgattatgctgctacaacgccctct
agtgatgagatcttggatagtccaggggatacagatgacatcagtcctatacgagagaga
actgccaccatagatgaaggctctcctgatgtagaagtgaagtttagagctggagatatt
ggatcgtatacggatgaggacttgccactgcgtcatcttctacgtctactctccagctct
ttcctgctgaccggctatcaggggtcacttatacctgaccgcaaggcaagggtcagtgtc
aaggtattggccatgggctgtgctagtcatatcattggcatgtacccaagagtcttcttt
gaccatctcttcaaaggaacagaacagggagtgaaagtagaggatgagcaatacatccgt
gaccttctcctgtatgtgggtcactcagacccccagctgagaggacaaaccttgatgctg
attggtcaactgttgcatgcctctctgattgaatccaactaccagtatactgattggtgc
tggcagatatgtggagaaaccaatacagatccagtaagcattgagtatcttgtgtccctg
ctctcttcagctgtctctgatgattcttctgtcactgcaagaagtatatgtcaagcttcc
aagctgtgccttcaagagctatgcagaagttgtcatggcagccttggcctgacgttgacc
tatgacctattgaaattaaccagcacaacctattggttggtacaagtggagttgctggaa
ttgatcagtggatttgacttcaaattgcttcactatcttgagtcaaggaaagtggaagaa
ttgaggaggggatatacatttatgagggaagatatacaaagagtagtcctagaggaggtt
gtcttcaagctcttaggaagcgaagatggcagggtcagaactgctgctggagatgcactc
tccaaacttgtcccaaagctgttctatccagtggaccaaccccaccaagaatccatctca
tccttagccaagacccaagtcacccggtacctggaccctgtgatgagggacctccagccc
tacacacctgccatcacgtccaccatggataacctaccagtatttcacagcaaagctcca
gagggaggatgcacattctctgaatctgccttctccagaatggtggctgttctctttgat
gtaatgagtaacaccatgtcaagatatagcacttatggctgtgtacgtgcccttgcccga
ctatcgggcagttttccagtgacagtccaccccagtgcttggggatgttcacagaacctt
tcatctttgtctcgctctcatgaaggatctcatcctaagctacagagacagagtagtctt
acatacaaaggaggttcaggaacgagtattggaagcacaggctgtggagcgagtgctgag
gagctggctggagggactggatgtgggagtctaccagtggttgtatctctcctcacatcc
tcagtgggtatgctagacctcgcagcccaacatgacatgctccagctggctaccaatcta
ctgctaggtgctgctgctaactcactcaagggcagctcctccaagaagaacgcttctcct
gccacctccccatcccaggaggcagaggggagcggagagacctggcagtgtctcaacaat
cggctcctggtccccatcgtggagcaggtcctgctccatgtcacgcgactcgtcagtatc
ttcagtcatgtgattgataaccaccaaccgggtccggccaagtcacagactgcgcttcca
tcattaccagctggtccttctctaagtcccatcaagaggaagagtaagatagggagagac
aaagatacaccagaccaatcaccagcaacccctcagaaccctaacaaaccaactccagat
aagtctgatgcatctgaggagaagaagtccaccaagtcaacctatggttccttctatcag
cacgcccactacatgaggttatatgaagtattaagaggagcatataagaactataaggct
acattagaactcaccaaacctgacaagttttgtctcttgctaaagatgtcattatcgtgt
ctcagtcagctactagagctagcttctatcacagaagtcggtcattacgttgaagaaatt
ctgggctacctaaagtcctgcgtcactattgaacccacgatgaccatattgtgtgttgaa
cagctgttgaaggctttattcttcaccaacatggccagcacccaagaactctcctcacct
caccatgcccgaaagaccggtaaagctgctcgtctgacctccaacatgaaacctgggctt
tatcacgattgcttcattgcaccatacacccagtacactcaatgcctggcttcaatgggg
ccaaagcttaccactacaccagatgcagaaaatgaaagcattggggtatttggttggatc
aaaaccagggcagacagaagagctagtctatcttcaaagagcagcaaggataagactgca
gttcagaactacattcgtctgtttgagcctctagtaatccgagccctgaagcagtacact
gtgagtagttgtgtggtgctacagcaacaggttcttcatctcctagcccagttggtccaa
ctcagggtcaactattgcttactggactctgatcagattttcctgaattttgttatcaag
cagtttgagtacttagaagaagggctagtcaagggatatgaagtgctaattccacatatc
ttcaacttccttgttctgttatcgtacgagaggtttcatagtaaaccagtgattgcaatg
cctaagattattcagctgtgtgacggtatcatggccagcggacagcaagcgtcgacccac
attgttccagctctgaagcctctagtccatgatctgttcatcctgagagccaataataaa
tcagagtcagccaaggagttggacactcagagggaggtggtggtttccatgctgcttaga
ctcattcactatagtcaggtcctggagatgttcacagcagtcctacagcaggcacatcgc
gagaatgaagaaaagtggaaacggctctccagacaagttgtagatatgatactccctctc
ctggcaagacaacagatcaacctagacactccagccgctcttgatgttctccatcatctg
ttagggactgtggctcccagctcactcaggcctgttgatatccttctgaaggctcttctc
ctagttccatatgatcaggtgagtgttgtatccatgcagcgatggctagccatggctcta
gctctgttgggtgtcttgaccacgcagtcaaaggaggaaaccatcctgtctcgtctccag
gagctaggtttgacctctgacctcttcatctgcgtattggatgcccagcataccaaggag
gacgccctcaacgccaatatgacccctcctgaggaagttctggcaaggttcttgttgcaa
atcgtagggtttactgtcaccactgtgcaaggtttcagatcctcaaagtccatagatggg
tcaggtgaccagtcacatgacttcctagcacaggagctgtccagactgcttctctctatg
acacacatgttcaaatctggaacatttaggaaagttggggtgatgatggctagtctaatc
gctagacctcagcaatcaaaatgctggtttgctctggacagtttgaatgaagcattccat
tcacttatacagacagacccaatactggtgctacagtggtgtcagctgctcctgctactc
aactttgattccactgattggtggatgcggatcctgcacaccccaaagagaccccctctc
tccaagtccctatcctcagggagcctggatcacctggagacaaacttggagacggagctc
tccaccgcagaggaggtggtcaagcaaggagcacttgtccttttctgtgattatgtgtgt
gagaatgaggcggatgcagagcctctaacatggctagttgtcaaccatgttaatgacatt
gtgcagctctcctatgaactacccgttcaagatcttgtaagtgcaattcatcgcaactcg
gccgctagcggtctctttcttcgtgcaataaacattcgattcaatcacatgaacaaccct
tgtcttgtgagacagaccctgaggttgctagaaggcattcaccttacgcagtcaggtatg
cttctgaccctcctaattgagaagttcctgacaacacactggcagtccattgccagggtg
gctagtgggctagcatgcaggagagtggagatgctactagctgagagggtggatcaacac
acgagggcgcaactcacccatgaggaattgacgaaactggaaggctttctcacttcaaat
aggctcgctcaaaaaaatcaaagattgatgtctttattaagtagattaaaacttgatctg
acagtagaggaaccagctccatctcctcccgacctacccagtgacttgccaaagaatctt
gccgatgtcttccttgataaggagtggtatgtgtccattgttcagtcctgttgctgtgga
accagtccatcttcatcaagccgagattgtgctaccatgctatcaagattatcctatgaa
gatatcatggctattttgacactagagggctttgaccacaccctgattggagaatgcatc
agcttgggattggcacgcacccagctcggagcacctgagcatgctcaaagcccttcaagt
gcccagccacccaatgctactccaacaagtaccacgccctcatcaagtaacgaacaccca
cttcaggcaacaccagttgacgccctcctgaaggcagccatgccaaccctcgtcacacac
ctgaaatcattcgctgctctcgtacctcggcctcatcggatccttgaaccgggttcagag
agacaagatgcaagggattactgtgcaaagatgatggaatgtttccaggatggagtgtgg
tgtcaccagctcaatgatatcgtggcagcattggctaggtatttcctggcctgtaggacg
ttgaagattgatctcgatatagaagcttctgaatgtatgatgtctctgacgattgcatca
ttagagctggtgagttggagtatatcagaaggtaaaccaatatcctcggcacaagctctc
cattccatggagtgcatcgctgaaatactccagcatcctgagctctcaactgtgattggt
gatccagatcatgtgacctggttctgttcagctattggttgcatctatcacatcatccaa
gcagggaaagtctggaaggaagagcatgaaccattcactgtgccaaagcttcaggaaatg
ccaggattagatttaagatttgatcatcaactccaagcctgccatcggatctctgaactt
gtggaactcttgaacgaaaacaccttccccaaggagcaggaagccttcctcaccaagacc
cctcaattcctgagggagcccatgaaaagcgtgatggttggccttgctcgcttgccctca
gtcaatggcttcgcaaggacccctcccatcctttggaagatgggatggtgcccaagcccc
ctggaacgtgctcagaccaacctgcctcctatacccttggagttcctcaaagaaaaggcc
gttctcagaagcttcattcagagggtcaactcaataggatggacaagccgttttcagttt
gaggagacctgggcttcactgctaggcttattgaaccctgctgacaatcctgaagatgtc
atggttgaggaggagatggagcagaatgaactgatgtgtttagccatacgagggatcacc
tccctgctactgaacaccatcctacgcccctcggccggcaaccccaccaacagtcgaccc
ctctgtatcccacgacacgacagcttgcccttccttgccaccaagaaaggtcagaggtta
ggtcgactccgagtccttgtcgaacgagagatgctagctatgcaatcaacaagatctcag
aagaccttggtacctgctacaagcacagcgatggaaggaccgtttgatgagatgctgaca
gctaacatggagacagaaggtaatcaggatgaattcacattgggacaggtctccgttcac
ggcatctgggccatcaacaatatgatcctaccactggttgaagaccagaaccagaatcga
ccagaaggcagcatcatccccctgggtcgtacagctatcccagcatccctcagtagggtt
ccgtccaatcttgatgtccactcctgtctggtgttgctgctggaggtatatggtcagtgg
cttgctccaggctcggcccgcaggacatcactcatgctactctgtgagaccatcaagtca
gtactgcttatctcagatatattcaccgagcgatctcagtttgaatggatgtatgagaca
ttgctggagttgaacaagattcaccctgtggaggatgagttagtgacgcagtatgtcatc
ccaggcatctgcaaggcagcatccgttctaggaatggacaaggatgtttctgagaaggtc
agcaaacttcttgaggtcacgttacggagtacgcatcttcccagccgagtgggggcgctc
tacggggtactctatatcctggagtcagacgctgtggaggatatccaagtctttgttccc
atggtaaccgattacatcactagaaacatcaaggctatatcaaattgcagtagttctgcc
tgtcagaaacatgttctggtgatgttgtcagtagcgttctatatcatggagtactactca
gatctaactgcaggatcagacttcactaaggctatccttcagcaatgtgtagtaatggtg
ctaatgagtgatgaatctacttcctggttggtttaccatgccattatggtaggctttgag
agacttctagtggcgcatgctctgggctcgcaagaaagagatatgctcaagaagctgagc
gttgacaggttgtgtctaccctcccccatgcatgccctgtcagcattgggtctgctactc
actagtatgtacactgctgaagatggtagaggggtgtcgtctgatgatgatgacatccac
catgagatgcaacctcaagatcctgaagaagtccttcttgccatggagagagtctctatc
atgtttgataggatacgaaagggatatccatcagaagcaaaggcggtagcgttcatcctt
cctccattcttgaatgacttctttccacctcaagatatcatgaacaaagtcataggagag
ttcttatccaaccagcaacctcacccccagcttatggcaacagtcgtcttcaaggtgttc
ggtaacctccatcggaacggccagacccagtctgtgagggattgggtgatgctctcactc
tccaacttcacccagcgtacaccggttgccatggcaatctggagtttgacatgcttcttt
atcagtgcctccacaaacaaatggctcagagccttactgagtcatgtgattaataggatg
gggaagctagagcctgtggatcgcaagtactttatccttgcagctaaagatttctacaat
actcaggtaattgatgaagcaagccggagagccttcacagcaacattccaggcagtcagc
aacacggatgctgcctatgcactgcttgcctag
DBGET
integrated database retrieval system
