Lytechinus variegatus (green sea urchin): 121426076
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Entry
121426076 CDS
T11173
Name
(RefSeq) integrin alpha-V-like
KO
K06584
integrin alpha 8
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04512
ECM-receptor interaction
lvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121426076
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121426076
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lvg04515
]
121426076
Cell adhesion molecules [BR:
lvg04515
]
Integrins
Integrin alpha subunits
121426076
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GFIT
Motif
Pfam:
FG-GAP
Integrin_A_Ig_1
Integrin_A_Ig_2
Integrin_A_Ig_3
FG-GAP_3
DUF11
ITGAX-like_Ig_3
bHLH-TF_ACT-like_plant
Rhabdo_M2
Ly49
Motif
Other DBs
NCBI-GeneID:
121426076
NCBI-ProteinID:
XP_041478160
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Position
13:23424904..23468472
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AA seq
1086 aa
AA seq
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MSSSSPSSSTRGYVFAMASLCVAVCSRWAVVVDAFNVDTSNPLIFQHSDTGSQFGLALTL
HREGGQNMLLVGAPRAVSSGYSPDMGIGRSGALFKCPIDTSTSVTDADSECQEIVVDTTG
NEYLTEDPNFQSTNATGQWLGSVVQSGGSDGSVVVCRPLYQYQALDNSEKIDRFLEGGCF
VINGGLTSPNLGLLDTVENYNPCAAKDDVVGYRKRYRCEFGGSAAVRDARIVYGAPGACL
WKGRFWYTAGTIDDSSPQYSYPQGACAFKLDFEYYFGHALAFGNFRDGPSSALEVAVGAP
RWKHGFARVFLYDDSQMEYDQLYASDLATYFGHALAASDLNNDGYDDLVVSAPMFTDEER
SIDAGWEVGKIFIYYNDQQGSFSIDNVDTIIGTGAGCRFGYSLAALGDINGDGFNDLAVG
APFCEGGDVGKVFIYHGTGINLPLNLSPQQILNPPEQGTPLKYFGFVISAGYDIDQNDYP
DFAVGAHESQTALIYRSRAVVSTSADIYVEENPINLDFKNMTTSNGISVAGFRVVICIQY
SGQGVPDNLNFIYDILLDSSRQLINRRAAFISNNMASLNGQTLSASLEGRTCATHDAYIR
PAIRDKQTPITLQLTHGLDEAAQSSSTVQPIMSNRATTVSINSLVFARDCAGETCYPDLG
LNTNVSTTQLMIGKAETFLVTVDVMNSGEDAFLSVLEIFEPPGLFFVSVQRSNTGTIVSC
SSSSTTNKRTCNIGNPLGAGDEITVKLQYQTATYSSFSGPAVLNLTARSTDAEKPGRDED
NFASVSIPVFASSSLVLTGNSIPDTLVIIEDSNETDSIGPPMSHVIRLQNNGPSFIGPSI
IEILWPIRLQDGTVLMTVAEASTETGMPCTSTLKINSGASTENNITTYEDDVSNTTIYTL
WADCDSLPECLVIQCPLSSLGVGADAAVIISVESMLLRDTVFAKYFLHYIEVVSTASVSV
NGTVYPGIPYSPHPTVSPLEIQTEIRVQYEKQRVFIQTTPIWIYIVSSIGGLLILIIVIA
ILYKVKFFKRKQITEEQREILQEHRKSVRRSRMSAPDPDSPPPDDALGMEESPLQREGSV
AGLIQE
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgtccagctcatcgccgagctcatcgaccagggggtatgtcttcgccatggcatcgttg
tgcgtggcagtctgttcgagatgggccgtggtcgttgacgccttcaacgtcgatacatcg
aaccctttgatttttcaacacagcgatacaggcagtcagttcggcctcgcgctaacgctt
caccgggaaggtggccagaatatgctgttggtgggggctcctcgggctgtctcatcgggg
tattctccggacatgggcataggacggagtggcgccctcttcaagtgcccgatcgataca
tctaccagtgttaccgacgctgactccgaatgccaggagattgtagtcgatactaccgga
aatgaatatcttacggaggatcctaacttccagtcaacgaatgctactggtcaatggtta
ggaagtgttgtacaaagtggaggctcggacgggtcagttgtggtatgcagaccgctgtat
cagtatcaagcgttagacaacagcgagaagattgaccgattcttagaaggtggttgtttc
gtcatcaatgggggtctgacgtcaccgaatttggggctgctggacacagtcgagaattac
aatccatgcgcagcaaaggatgacgtagttggatatcggaaaagataccgatgtgagttt
ggtggtagcgctgcagtaagagatgctcgtatcgtttacggtgctccgggggcctgttta
tggaagggtcgattttggtacacagcgggaacaatagatgacagttctcctcagtactcc
tatccgcagggagcttgtgcctttaagcttgattttgaatactactttggtcatgctctt
gcgtttggaaatttccgagacggtccctcctctgctttggaggttgcagttggcgcacca
cgttggaagcacggattcgcgcgggtattcttgtatgacgattctcagatggagtacgat
caactttacgccagtgatttagccacgtactttgggcatgccttggccgcttcggatctt
aataatgatgggtatgatgatctggtagtcagcgcaccaatgtttacagatgaggagagg
tcaatagacgctgggtgggaggttggcaaaatcttcatttactataatgatcaacaggga
agtttttctatcgataatgttgacacaatcattgggaccggtgcaggatgtcgtttcggc
tattccttagcagctttgggtgatatcaatggagatggttttaatgatttggcggtgggg
gcgcccttctgtgaaggtggtgatgttggcaaagttttcatttaccatggcactgggata
aacttgcccctcaatctctcaccacaacagatcttgaatcctccagaacaaggcacacct
ctgaagtactttggatttgtgatatcagccggatatgacatcgatcagaatgattatcca
gattttgccgttggcgctcacgagtctcaaactgctttaatatatcggtcgagagccgtg
gtgtcgacaagcgcagatatatatgttgaggaaaacccgataaatctggacttcaagaac
atgaccacttcaaatggcatctccgtagcagggttccgtgtcgttatctgcattcagtat
agtggacaaggggtacctgataacttgaatttcatatacgacatcctcttggactcgtca
aggcaacttatcaaccgtcgagccgccttcatcagtaacaacatggcgagtcttaatggc
cagactttaagtgcgtcactggaaggtcggacatgcgcgacgcacgatgcatatatccgg
cctgcaattagggacaaacagaccccaataactcttcagcttacgcatggtctagatgaa
gcagctcaatcaagctctactgtacaacccatcatgtctaaccgggccaccacagtctct
attaactcccttgtctttgccagggattgtgcgggcgaaacgtgttatccagatctcggt
cttaacaccaatgtttcgactacgcagctgatgattgggaaggctgaaactttcttggtt
acggtcgacgtcatgaatagtggggaagacgctttcctatctgtactcgagatctttgaa
ccccctggcctatttttcgtcagtgtccaacgatcgaatacaggtaccattgtgtcatgc
tcaagttcgtcaactacaaacaaaagaacgtgcaatattggcaatcctttaggagccgga
gacgagataactgtaaaactacagtatcagacggctacgtatagttctttctctggtcct
gctgtcttgaatttgacggctcgcagtactgatgctgaaaagccaggaagagatgaagat
aacttcgcaagtgtttcgatcccagtctttgcatcatcctctctggtgctcactggcaat
tcaattccagacaccctggttattatcgaggatagcaatgaaacggacagcattgggcct
cccatgagtcacgtgattcgattgcaaaacaacggccccagtttcatcggcccctccatc
atcgagatactatggccgatcagactccaggacggcactgtcctaatgactgtggccgag
gcctccaccgaaacaggcatgccatgtacttctactttgaaaataaacagtggcgcttca
acggagaacaacatcaccacctatgaagacgacgtcagcaatactaccatctacacgtta
tgggccgattgcgattcccttcccgaatgcttagtgatccagtgccctctgtcttccctt
ggcgtcggggcggacgcagccgtcattatcagcgtagagtcgatgctgttgcgtgataca
gtgttcgcaaaatattttctacattacatagaggttgtttccacagcgtccgtctcggtc
aatggtacggtgtaccctggtataccttattccccacaccccactgtttcacccctcgag
atccagacagagatcagggtacagtatgagaaacaaagggttttcatccagaccacacct
atatggatctacatcgtttcctctataggtggtcttctcatcctcatcattgtcatcgca
attctatacaaggtgaagttcttcaagcgcaagcagataactgaggaacagcgagagatt
ctgcaagaacatcggaagagtgtccgaaggtccaggatgtccgcgcccgatcccgattcc
ccacctcctgacgacgccttgggtatggaagaatcgcccttacaacgagaaggttctgtg
gctggtcttattcaagaataa
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integrated database retrieval system
