Lytechinus variegatus (green sea urchin): 121426093
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Entry
121426093 CDS
T11173
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121426093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121426093
Spliceosome [BR:
lvg03041
]
Complex A
U1 snRNP components
U1 related factors
121426093
Complex B
121426093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
Glyco_hyd_101C
Motif
Other DBs
NCBI-GeneID:
121426093
NCBI-ProteinID:
XP_041478178
LinkDB
All DBs
Position
13:complement(34992861..35021746)
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AA seq
1018 aa
AA seq
DB search
MSGPGNQPPAGGNPPFNPQGPMMMPPFGGPGMPPPPFPMPGQGPPPSGGPPPQGGPGPGG
GPPMNMPPPNFGQPPPGMPPMPPMGMPPPGWPNAPNMGMPPMMPPGFPPGMFPPVVPPTV
PPVSTMSSAKTSSAETTATTAASAPTGSASDSETTAKPSSSGDNKPSESKPTLKDTVQGG
GDEPPAKKKLDYSAIGNKSQWTEHKAPDGRTYYYNNNTKQSKWEKPDELKTRAEILLSEC
PWKEFKSDSGKVYFHNSQTKESKWTIPKDLEDLKARIEAEGLDKVLPNSPDGSDTTSADK
PQTEEAAAKQEAQDTPPSQAETTQPATTVPAVTAAAAGTGAAMDPTAAAAAAVMNPAVAA
AAMMGIPLPGVPMPGVPPGILPFMAAQGMVPGATPKTDEDAGSASESRPDTPELKEVVYN
TKEEAKDAFKQLLRERSVPSTANWDQAMRLIVNDPRYKALTKLSEKKQVFNNWKVQRGKE
EKEEQRLKAKKAKEELQEYLQQHPKMTSTTRYRKADAMFEDEEIWRVVPDRDRKDLYDDV
IFFLSKKEKEEAKVLRKRNIEAMNNILDSMPNVTFRTTWSECQRYLAENPSFAEDDELMS
MDKEDALICFEEHIRQMEKEEEEELERAKMLKKRHFRKCREAFLVLLDELHDRGQLHSMA
LWMDLYPIISADPRFNSMLGKPGSTPLDLFKFYVDDLKARFHDEKKIVKDILKDRNLTVE
LTTSFDDFASTISTDKRASTLDAGNIKMAFNSLIEKAEAREKERQKEEARKQRRKESAFK
TMLKQSAPPLDVNSNWDDVRDRFVNDHAFDGITVESERIRLFKEFITSLEAACAHHHGKS
SSRKHSKKSKKHRSRRSPSKSSDSDDEQDERERERERERERERERERERERERERERERE
RERERDSHKRSKKKKRSKTPSDSSGHESDHSKSKSSKRHKKKTKKKCRRTPASDSGTDEK
ESGEISVPHKPSKSATPSMSTETPKKEKTGWDTSDSELSEGELERRRRALLEQLAENH
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgtctggacctgggaaccagccacccgctggggggaatccccctttcaaccctcaaggt
ccgatgatgatgccaccatttggggggccaggaatgcccccaccaccattccccatgcca
ggtcaggggcctccaccatcgggtgggcctccgccacagggagggccaggacccggggga
ggacccccgatgaacatgccgccaccaaactttgggcaaccccctcctggaatgccccct
atgcctcccatgggcatgccaccccctggatggcccaatgcacctaacatgggtatgcct
cctatgatgccaccaggcttccctccaggaatgtttccaccggttgtacctcctacagta
ccacctgtatctaccatgtcatcggctaaaacaagctctgcagaaacaactgccactact
gctgcatcagctccaacaggaagtgcttcagattcagagacgactgcaaagccttcatca
tctggtgacaacaaacctagtgagagcaaaccaactctgaaggatacagtacagggaggg
ggagacgaaccaccagctaagaaaaagctggattattctgccattggaaacaagagccag
tggacagagcacaaagcaccagacggaaggacatactactataacaataataccaagcaa
tccaagtgggaaaaacctgatgaactcaagacaagggccgaaatccttttgtctgaatgt
ccttggaaggaatttaaatcagattccgggaaggtgtacttccacaacagtcaaactaag
gagtctaagtggactatacccaaagatttggaagatttgaaagctcggattgaagcagag
ggtttagacaaggtgctcccgaactctcctgatggctccgataccacatcagcagacaaa
ccccaaactgaagaagcagctgcaaagcaagaggcgcaggacacgcccccttcccaggcc
gagaccacccagccagctacaactgtaccagcagtcacggccgctgcagcagggacaggg
gctgctatggaccctactgctgccgctgctgctgctgtaatgaacccagcagtggcagca
gcagccatgatggggattcccctcccaggggtacccatgcccggtgtgccgccgggtatc
ctaccgttcatggcggcacagggaatggtacccggtgccactccaaagacggatgaggat
gctggaagtgcatcagagtctcgaccagacacaccagaactaaaagaagtagtctacaat
acaaaggaagaagctaaggatgcttttaaacaacttctcagggaaaggagcgttccatcg
acagcaaactgggaccaggccatgagactgatagtgaatgatcctcgatacaaagctctt
accaaattgagtgagaagaaacaagtattcaacaattggaaagtacagagaggcaaggaa
gaaaaggaggaacagcgattgaaagccaagaaggctaaggaagaacttcaagagtatctc
caacaacatcctaaaatgacttctaccactagatacaggaaagcagacgctatgtttgag
gatgaggaaatctggagagtggtaccggatcgggatcggaaggacctctacgacgatgtc
atcttcttcttgagcaagaaggagaaggaggaggcgaaggtgttgcgcaagagaaacatc
gaagcgatgaacaacattcttgatagcatgccaaacgtgacgttccgtacgacgtggtcc
gagtgccagcgctatctggccgagaatccatcgtttgctgaagatgacgagcttatgagt
atggacaaagaggatgcattgatttgttttgaggaacacattcgtcagatggagaaggag
gaagaagaagagctagagagagctaagatgttgaagaagagacactttagaaagtgccgg
gaagcatttctggttcttcttgatgagttgcacgacagaggtcagcttcactccatggct
ctgtggatggatctatatccaatcatcagtgccgatcctcgcttcaatagcatgctgggt
aaaccagggtcaacgccccttgacctctttaagttctacgttgatgatctcaaggcccgt
ttccatgacgagaagaaaattgtcaaggacattctcaaggataggaacttgacagtagaa
ctcacaacaagttttgatgactttgccagcactatcagcacagacaaaagggcatccacc
ttagatgcaggaaacatcaagatggcattcaatagtttgatagagaaagcagaagcaagg
gagaaggagagacagaaagaagaagccaggaaacagagaaggaaagagagtgcgttcaag
acgatgcttaaacaatctgctccacccctagatgtcaactcaaactgggatgatgtacga
gatcgcttcgtcaacgaccatgcattcgatggaatcacagttgagtcagaaaggatccgt
ctgttcaaagaattcatcacttcactcgaagctgcttgtgcccatcatcacgggaagtct
tcatctcggaagcattctaagaaatcaaagaaacatcgcagcagacgatctccatccaaa
tcgtccgattctgatgatgaacaggatgaaagagagagggaaagggagagagagcgtgaa
agagagagggagagggaacgagaacgtgagagagaaagggaaagagagagagaaagggag
agagaaagagagagagacagtcacaaacgctctaagaagaagaaacgttcaaagacacca
tcggattcatctggtcatgaatcagatcatagtaagagcaaatcatccaagaggcacaag
aagaaaaccaagaagaagtgcaggagaacgcctgcatctgattctggtacggatgagaag
gaaagcggtgagatatcagttcctcacaagccaagcaagtcagcaacaccatccatgtct
acagaaacacccaagaaagaaaagactggctgggacacctctgacagtgaattaagcgag
ggagagttggaaagacggagaagagcattactagaacaactggctgagaatcattga
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