Lytechinus variegatus (green sea urchin): 121426164
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Entry
121426164 CDS
T11173
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121426164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121426164
04121 Ubiquitin system [BR:
lvg04121
]
121426164
03036 Chromosome and associated proteins [BR:
lvg03036
]
121426164
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121426164
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
121426164
Ubiquitin system [BR:
lvg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121426164
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
121426164
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
121426164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_5
Ank_4
Ank_3
zf-RING_6
BRCT_2
BRCT
zf-RING_5
RTT107_BRCT_5
zf-RING_10
Prok-RING_4
PTCB-BRCT
zf-C3HC4_2
Ank_KRIT1
zf-C3HC4
LIG3_BRCT
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
121426164
NCBI-ProteinID:
XP_041478288
LinkDB
All DBs
Position
13:complement(1547227..1560134)
Genome browser
AA seq
869 aa
AA seq
DB search
MQCARDSINFLDKTPEIHPVWADRFPIEVMFLSTKSALQQLEVSLQCSACHKLLTEPCTL
GNCTHLICKACAGNYQGNACPTCQAPAWVKDLQVKRELGMVVRLCRRLQRLINNDPEQVD
SASIDLSEDTGPVRTGEGGSSLGKDDEDSCVNEASEIADDSETEPMSISESDTDFHKHRE
IVRKALRSVQGSDTDSLSGMEREKAGSQIGKKRGRVLQNARKKSDGDPDLMKHGIKTQGN
HKPDNKGSGESSKKASVNRQRNQKPNDENNPLSVYEFQASPPHPKTRKAKLQVIQQTKRE
ARLRKVAAANKKWDSVSSVTGSKKEGRKHVSFSDDSLKSGSSSAEDASKRDVKTSKAKTK
PVAKTAVSPEDGIRMKGKSVKDKEKTSPVVSKLQNQKVKKSRVQITESLPDDASNVTPEC
SPSVPRAGQKRRSPSSTVSVTVKPSTPDSAGKRKKTVKEHTPETPTTSSRTGQKKRLSGG
RTSLSPNSSYSSPKTAVMKRNKRGETPLHVACIKGDENEVKSLLEQGADPNSKDNAGWTP
LHEACNHGHTSLLGLLLDHNALINAPGFEHDTPLHDAVNNNRIPVIKYLRERGASLETRN
IHGQTPLDLPAAPAIKEALLTKPLLEVTNSPVSTPVTAPSQHLQDRQVVLLGTGLKPKEK
TSLITCSDILEGRVVDEFSPDVTHLVAACEEDGRCLRTMKYMQAVLAGRWVVSSKWISEC
IKHEERVEEIEFEIPGTSSDPDSNTPRRGRENVQKQFPGLFNGCHFFLKGSFKHPTPLKP
ELIQLIKLGGGTILQRHPKPDDDVIQVSTVVPYHARPNSQYASCSYYIVYDHLGKKPPPS
VRTQKVCTVPVYWLLDCVSQFTILDPPKE
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgcgcgcgagattcgatcaactttcttgacaaaacacccgaaattcatccagtt
tgggcagatagatttcccatagaagtcatgtttttgtcaaccaaaagtgcacttcagcag
ctggaagtttcccttcaatgttcagcatgtcacaaacttcttacagagccatgcaccctg
ggaaactgtactcatcttatttgcaaggcttgtgcaggaaattaccaaggcaatgcttgc
cctacctgtcaggccccagcatgggtaaaggacttgcaggtcaagagagaattggggatg
gtggtccgtctctgtcgaagactccaacgactgatcaacaacgaccctgaacaagtagat
agtgccagcatagatctgagcgaagacactggtcctgttcggacaggggaaggtgggagc
agtttgggaaaggatgatgaagattcctgtgtgaatgaggcctcagagattgctgatgat
tctgaaacagagccaatgtctatctctgaatcagacacagattttcacaaacacagggag
attgtccgcaaggcccttcgctctgttcaggggtcagacacagactccttatccgggatg
gaaagagagaaagccggcagtcaaattggcaagaagagaggaagggtcctgcagaatgcg
aggaagaagtcagatggggatccagatttgatgaagcatggtataaagacacaaggaaat
cataaacctgataacaaaggaagtggtgagtcaagcaagaaagcttcagtcaacagacag
agaaaccagaagcccaatgatgaaaacaaccctttgtcagtgtatgaattccaggcctcg
cctccacatccaaagacacgcaaagcaaaactgcaggtcattcaacagaccaaacgggag
gcacgactgaggaaagtggctgcagcaaacaagaaatgggactctgtgtccagtgtcaca
ggatcaaaaaaggaaggtagaaagcatgtttctttctccgatgatagtttgaaatcagga
tcaagtagtgctgaggatgcgagtaaacgtgatgtcaagacatccaaagcaaagaccaaa
cctgttgcaaagactgcagtttctcctgaagatggtattaggatgaagggcaagtctgtc
aaagacaaagagaagacatcacctgttgtctccaagcttcagaatcagaaagtaaaaaag
tcaagggttcagatcacagagtccttgcctgatgatgcatccaatgtgacaccggaatgt
agtccaagtgtgccacgagctggccagaaaagaagatcaccatcttcaacagtttcagtc
acagtaaaaccttccaccccagacagtgctggcaagagaaagaaaacggtgaaagagcat
actccagagactcctaccaccagcagcagaacaggtcaaaagaagagactttcaggagga
aggacttcattgagcccaaattcatcgtatagttcaccaaagactgcagtgatgaagaga
aacaagagaggggagactccactgcatgtagcatgtattaaaggtgatgagaatgaggtc
aagtctctcttggagcaaggagctgatcctaactcaaaggacaatgcaggatggactcct
ctgcatgaagcctgcaaccacggtcatacatccttactaggtcttctcctagatcacaac
gctctgatcaacgcacctggatttgagcatgacacgccccttcatgatgcagtcaataac
aacaggataccagtcatcaaatacctcagggaaagaggagcttcgctagaaacaaggaac
attcatggtcaaacaccgctggacttacccgctgctccagccattaaggaagctcttctt
accaaacccctattagaggtcaccaattcacctgtctctaccccagttaccgccccatca
caacacctacaagatagacaggtggttctacttggaacaggcctaaagcccaaggagaag
acttccctgattacttgcagtgatatccttgaaggaagagtagttgatgagttcagtcct
gatgttacccatcttgtagcagcatgtgaggaggatggtagatgtctacgaaccatgaaa
tacatgcaggcagtactagcaggaagatgggtggtgtcttcaaaatggatttcagaatgc
atcaaacatgaagagagagtagaagagatagagtttgagattccaggaacatcctctgat
cctgatagcaacacacctaggagaggacgggaaaatgtccaaaaacagtttccgggattg
ttcaacggctgtcacttctttttgaagggctccttcaagcatccaacacccctcaaacca
gaactcattcaactcatcaaattaggaggaggtaccatcctccaacgtcatcccaaacct
gatgatgatgtcatacaggtctcaacggtcgttccttatcacgcaaggccaaactcccag
tatgcatcctgttcgtattacatcgtttatgaccatctagggaagaagccgccaccgagt
gtcagaacacagaaagtctgcactgtaccagtatattggctgttggactgtgtgtctcag
ttcaccatattagatcccccaaaagaatga
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