Lytechinus variegatus (green sea urchin): 121426189
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Entry
121426189 CDS
T11173
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121426189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121426189
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121426189
Spliceosome [BR:
lvg03041
]
Complex C
Other components
Step II factors
121426189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
S1
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
GIPC1_GH2
nSTAND3
AAA_30
nSTAND_NTPase5
UvrD-helicase
PhoH
TsaE
NB-ARC
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
121426189
NCBI-ProteinID:
XP_041478327
LinkDB
All DBs
Position
13:20733401..20754992
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AA seq
1223 aa
AA seq
DB search
MDELERLEHLSLVSKVCTELDNHLGLNDKDLAEFIISLAEKHETLEAFKSVLAENGADFP
ESFTSNLLRLIQHMKPKKARKEDEAKPETKDDKKRQAFPGLCIPDKPEVREMLAEDEQIA
LDAMDELEALMPKHLGTQVKKEGSDERDSKKSRKEDSRTRSRSRSPDSDKPRKHKHKHKD
RDRDRDRDRDRDRDRDRRRRRSRSRSRDRDRRRSRSRDRSRRHRSRSRSRERSDKRKYRD
RDDGKDAEGDSRKEKYNDKFVDRPPSLEPEVGEVYEGKVTSVMQYGCFVQLSLRRRCEGL
VHISELRREGRVADVSDVVSRGQQVKVKVLSIAGTKIRLSMKDVDQATGEDLNPVKAKSA
PETNEEEGMNPYRPADLPLINAPDSDDVAIRKRVQRVTSPEKWELKQMMAASCIDKADFP
DYDESTGILPKDEDNSDEEIEIELREEDPPFLRGHGRQSVDLSPVRIVKNPDGTLSKAAM
MQSALAKERREMKQATERAEAENIPTGMNKNWIDPMPESERTLVANIRKTGMTSQELPEW
KKSAFGGNKASYGKKTKLSIVEQRQSLPIYRLKKELVQAVDDNQILIVIGETGSGKTTQI
TQYIAEAGYTVRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGQEVGYTMRFEDCTSPETKV
KYMTDGMLLRECLIDPDLTQYSVLMLDEAHERTIHTDVLFGLLKKAVKKRPDLKLIVTSA
TLDAVKFSAYFFEAPIFTIPGRTFPVEILYTKDPETDYLDASLITVMQIHLTEPPGDILL
FLTGQEEIDTACEILFERMKSLGPEVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIA
TNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDQLVVTPISQAQAKQRAGRAGRTGPGK
CYRLYTERAYRDEMLPTAVPEIQRTNLASTLLSLKAMGINDLLAFDFMDAPPTETLITAM
EQLHSLSALDDEGLLTKLGRRMAEFPLEPMLSKVLIMSVHLGCSEETLTVVSMLSVQNVF
YRPKDKQGLADQRKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCFENFVQARTLRRAQDV
RKQLLGIMDRHKLDVVTCGKNTARVQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYVHPS
SALFNRQPDWVIYHELVLTTKEYMREVTTVDPKWFVELAASFFRFSDPTRLSKAKKQQRL
EPLYNKYEEPNAWRISRQRLRRN
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggatgagttagaacggcttgaacacttgtcccttgtatccaaagtgtgtacagaactg
gacaaccatcttggactaaatgataaagacctagctgaattcatcatcagccttgccgag
aagcatgaaacccttgaggccttcaagtcggtgcttgcggagaatggggcggacttccca
gaatccttcaccagcaatctcctccgtctcatccagcacatgaagcccaagaaggcgcgg
aaagaagatgaagcgaagccggagaccaaagatgacaagaagagacaggcctttcctgga
ctgtgtatcccagataaaccagaagtcagggaaatgttggcagaagatgagcagattgcc
ctagatgccatggatgaattagaagctctcatgcctaaacatctaggaacacaagtgaag
aaagaagggagtgatgaaagagattcaaagaagtcccgtaaggaggatagcaggacgagg
agtagaagcaggagtcctgattcagacaaaccccgcaagcacaaacataaacacaaagac
agggatagggacagagatagagacagggacagagatagggacagagataggaggagaaga
cgctcaagatctcgtagccgcgaccgtgacaggaggcgcagcaggagccgggatcgtagc
cgcaggcacaggagcagaagcaggagcagggaacgtagcgacaagcgcaaataccgtgat
cgtgacgatgggaaagacgcagaaggagactcgcggaaggagaagtacaatgataaattt
gtggacagaccaccctcgcttgagccggaggttggggaggtctatgaggggaaggtgacg
agcgtgatgcagtacggttgttttgttcagctttccctgagaagacggtgtgaaggcttg
gtgcatatatcagagctgaggagagaagggagggttgccgatgtcagcgatgtcgtgtca
agaggtcagcaggtaaaggtcaaagttctctctatcgcagggaccaagatcagactttca
atgaaagacgtcgatcaggctacgggagaggacttgaaccctgtcaaggcaaagagtgcc
ccagagacgaatgaggaagagggcatgaatccataccgacctgctgaccttccattgatc
aatgctccagactctgatgatgtagccatcaggaagagagtccagagggtaacttctccc
gagaagtgggaacttaaacagatgatggcagcaagttgcattgacaaagctgatttccca
gattatgatgaaagcactggtatcctcccaaaggatgaagataactctgatgaggagatc
gagattgaactgagggaagaggatccgcccttcctcaggggtcatggccgccagagtgtc
gatctcagcccagttcggatcgtcaagaatcctgatgggaccttatcgaaggctgctatg
atgcagagcgccctcgctaaggagagacgagagatgaagcaagcaacggagagagccgag
gccgaaaacatccctactggaatgaacaagaactggatcgaccccatgcctgagagtgaa
cgtactctggttgccaatatccgtaagaccggtatgaccagtcaggagttaccagagtgg
aagaagtcagccttcggtggaaacaaggcttcctatggaaagaaaactaagctatccatt
gtagaacagaggcagagtttacctatttatagactcaagaaagagctggtacaggctgtg
gatgacaatcaaatccttattgttattggagaaacagggagtggaaagaccactcagatc
acacagtacattgccgaagcgggctacactgtcaggggtaagatcggatgcacccagccc
cgccgtgtggctgccatgtccgtagccaagagggtggcagaagaatttgggtgcagactt
ggccaagaagtgggttacaccatgcgtttcgaggactgcacttctccggagaccaaagtc
aagtacatgacagatggtatgctgctgagggagtgtctcatagacccggatctcacccag
tactcggtcctcatgttagatgaggctcacgagaggaccattcatactgacgtcctcttt
gggctgctcaagaaagctgtgaagaagagacctgacctcaagctcatcgtgacctcggcc
accctggacgctgtcaagttctcagcttactttttcgaagctcccatctttaccattcct
ggtcgtacattccctgtagagattctctacaccaaggatccggagacggactatctggat
gcatccctcatcaccgtcatgcagatacatcttacagaaccgccaggtgatattctgctc
ttcctcactggtcaggaagagatcgacacagcctgtgagatcctgtttgagaggatgaaa
tcacttggtcctgaggttcctgaattgatcattcttcccgtgtattctgcccttcctagt
gagatgcagaccaggatctttgatccagctcctccagggagcaggaaggttgtgattgct
accaacattgctgaaacctccttgaccatcgacggtatctactatgtggttgatccagga
tttgtgaagcagaaggtgtacaactccaagactggcatggatcagctggtcgtgaccccc
atctcccaggctcaggccaagcagagggcaggcagggccggcaggacgggtcctggcaag
tgctaccgcctctacacagagcgtgcctacagagacgagatgctgcccacggcggtgcca
gagatccagcgcaccaacttggctagtaccctcctgtcactgaaagccatgggcatcaac
gaccttctggcgtttgatttcatggatgccccgcccacagagacgttgatcacggctatg
gaacagcttcattcgctgagtgcgctggatgatgagggactgcttacaaagctgggcagg
aggatggctgagtttccgctagagcccatgctgtccaaggtgttgatcatgtctgttcat
cttggttgcagcgaagagaccctgacagtggtgtctatgctgtccgtacagaatgtcttc
tacagacctaaggacaagcaaggtctggctgaccaacgtaaggccaagttccaccagccg
gaaggagatcacctgaccctcctagccgtctacaactcctggaagaacaacaagttctcc
aacccctggtgctttgagaactttgtccaggcccgcaccctacgcagagcccaggacgtc
cgcaagcagctcctcgggatcatggacaggcacaagcttgatgtggtcacctgtggtaag
aacacagccagggtacagaaagccatatgcagtggtttcttcaggaatgcagctaagaag
gacccccaggagggttataggactctggttgatagtcaggttgtctatgttcatccttca
agtgctctcttcaatagacagccagattgggtgatttatcatgagcttgtgctgacaacc
aaggagtacatgagagaggtgaccacagtagaccccaagtggtttgtagagctggccgct
tccttcttccgcttctcagacccgaccagactcagcaaggccaagaaacaacaacgtcta
gagccgctctacaacaagtacgaggagcccaatgcctggaggatctcccggcaaagattg
cgtaggaactga
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integrated database retrieval system
